Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04974 ATGGCAGAAACTGCAGTATCATTTGTTTTACAAGAACTAGGCCAATTTGTAATAAAAGAAACTAGCCAATATACAGTAGAAGAAAGAAATTCAGTAGCAGGGATTGAAAGAGACTTCAATGATATCAAAGATGAACTTGAGAGCATCCAAGCCTTCCTCAAGGATGCAGACACAAAGGCTGCTGATGATGATGATGGATCCAATGGAGTCAAAACTTGGGTGAAGCAGATTGCTTCTGAGATTCAAGACATCAAGTTATCACTTGGTAGAATCAAAGAAAGAAGTACAAGGTTCGAGTTTCTGTCTGAAAATGAAGCAGGAAGGACTAAAGCTCCTAGAATTGGTGACCCTCGAATGGCTCCGTATTTCATTGAAGAGACTCAAGTTGTAGGATTTGAGTCCGCGCGAGATGAATTGGTCAGATGCTTGGTGGAGGAAAACAATGAGCTCATGTTGGTTGATGTGGTTGGCATGGGAGGACTCGGGAAAACTACTCTCGCAAAGCATGTTTTTGATAGCCAGCTAGTGAAAAAGAACTTTGATTGTAGATCTTTCATCACTGTTTCGCAATCGTACACCATCAGAGAGCTGTTGACAGAAATTATAAAGAACTTTTGCAAGGACAGCAACGAGCCTATTCCAAGGGGTCTGCAGAATATGGATGATGAAACTTTGATTAATCAAGTGAGACAATACCTTGAGTCAAAAAGGTACTTGGTTTTATTTGATGATGTCTGGAAAGATAATTTTTCTGATGGGATTGAACATGCCTTAATTAGTAATAACAAAGGAAGTAGAATCATTGTGACTACTAGAAAAATGCATGTAGCTGATTATTTTAGGAAATCTTTTCCTGTTCATGTCCATGAGCTACAACGTTTGCCTCCAGACAAAGCATGGGAGATGTTTTGCAACAAGACGTTTAGAGGGCACTGTCCAACAGAACTTGAGGAGATGTCCAGAGAAATTGTTCAAAAATGTGGAGGGCTACCATTAGCTATTGTGGCCATCGGTGGTCTTTTGTTAACAAAAGCTAAAACCCTCATTACAGCTACTCAAAATCACGAATATCCGTCAACACAAAGACATCATAACGCTCACAAACAACACAGAGAATCAACGGATAGCAGAAACTGA 1137 0.3975 MAETAVSFVLQELGQFVIKETSQYTVEERNSVAGIERDFNDIKDELESIQAFLKDADTKAADDDDGSNGVKTWVKQIASEIQDIKLSLGRIKERSTRFEFLSENEAGRTKAPRIGDPRMAPYFIEETQVVGFESARDELVRCLVEENNELMLVDVVGMGGLGKTTLAKHVFDSQLVKKNFDCRSFITVSQSYTIRELLTEIIKNFCKDSNEPIPRGLQNMDDETLINQVRQYLESKRYLVLFDDVWKDNFSDGIEHALISNNKGSRIIVTTRKMHVADYFRKSFPVHVHELQRLPPDKAWEMFCNKTFRGHCPTELEEMSREIVQKCGGLPLAIVAIGGLLLTKAKTLITATQNHEYPSTQRHHNAHKQHRESTDSRN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04974 378 Gene3D - 4 104 - -
Vifa4g04974 378 PANTHER DISEASE RESISTANCE PROTEIN RP 40 345 IPR044974 GO:0006952
Vifa4g04974 378 Gene3D - 120 285 IPR027417 -
Vifa4g04974 378 Gene3D - 294 374 IPR042197 -
Vifa4g04974 378 Pfam Rx N-terminal domain 5 84 IPR041118 -
Vifa4g04974 378 MobiDBLite consensus disorder prediction 360 378 - -
Vifa4g04974 378 PRINTS Disease resistance protein signature 327 341 - -
Vifa4g04974 378 PRINTS Disease resistance protein signature 232 246 - -
Vifa4g04974 378 PRINTS Disease resistance protein signature 152 167 - -
Vifa4g04974 378 FunFam Probable disease resistance protein At1g61300 116 283 - -
Vifa4g04974 378 Pfam NB-ARC domain 136 350 IPR002182 GO:0043531
Vifa4g04974 378 MobiDBLite consensus disorder prediction 355 378 - -
Vifa4g04974 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04974 Vifa-Chr4 1564127860 1564129137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04974 130 346 WRKY Transcription Factor Family AT5G45050 26.126 5.79e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04974 K13457 - vun:114181831 403.675