Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04971 ATGGGTTTCCGATTACCTGCTATTAGACGGGCTTCATTTACTGGTAGCCAATCATCATCAAAAGCTTTGAATGTACCAAAAGGTTATCTTGCAGTGTATGTCGGAGAGAAAATGAAGCGCTTTGTTATCCCTATGTCTTACTTGAACCAACCTTCATTTCAAGACTTGCTGAGTCAAGTAGAGGAAGAATTCGGATATGATCATCCGATGGGCGGCCTTACAATTCCTTGTGCAGAAGATGCATCCAGTTTTTACACATTTCTTATGCTTCAGATGCTTACTACTGCTTTTAAGTATCAGACTATTGCAAATGCTTGGCTTGCACTAAACGATGATCGTCTAATACCAGGTAGCCAATCATCATCAAAAGCTTTGAATGTGCCAAAAGGTTATCTTGCAGTGTATGTCGGAGAAAAAATGAAGCGCTTTGTTATCTCTATGTCTTACTTGAACCAACCTTCATTTCAAGACTTGCTGAGTCAAGTAGAGGAAAAATTCAGATATGATCATTCGATGGGTGGCCTCACAATTCCTTGCACACAAGATGTTTTCTTGCTTATTACATCTCGCTTCAGTGGACTATAA 585 0.3966 MGFRLPAIRRASFTGSQSSSKALNVPKGYLAVYVGEKMKRFVIPMSYLNQPSFQDLLSQVEEEFGYDHPMGGLTIPCAEDASSFYTFLMLQMLTTAFKYQTIANAWLALNDDRLIPGSQSSSKALNVPKGYLAVYVGEKMKRFVISMSYLNQPSFQDLLSQVEEKFRYDHSMGGLTIPCTQDVFLLITSRFSGL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04971 194 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 81 IPR003676 GO:0009733
Vifa4g04971 194 Pfam Auxin responsive protein 119 187 IPR003676 GO:0009733
Vifa4g04971 194 Pfam Auxin responsive protein 13 80 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04971 Vifa-Chr4 1564039130 1564042725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04971 14 77 Calmodulin-binding Proteins AT3G43120 53.125 1.14e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04971 - K14488 aip:110269930 224.557