Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04958 ATGAACAAGAACAAGTTCCCTTTTTTTACTCCTTCACAATGGCAAGAGCTTGAACATCAAGCCCTTGTTTACAAGTACATGGCTTCTGGTATCTCTATTCCTCCTGATCTTCTTTTCACCATTAGAAAAAGCTTTTTGGACTCTCCTCTCTCTTCAACACTTTTGCCTAACACCCAACAACATCATTTTGGATGGAACTATCTGCAGATGGGTTTGGGAAGAAAGATATATCCTGAGCCAGGAAGATGTAGAAGAATAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAGAGACATATGCATAAAGGAAAAAAATGTTCAAGAAAGCCTTTGGAACTTCTGAAAACAACAACAAATAATGCTTCAACACAACATCAAGGTCATCAGTATCTTCTGGTATTAGTTTGTCATTTGAAGACAATAATGGTTCCTTGTTTCTTGACAGTAACTCTTGCTCTCAGAATAATGGAGATTACAGTTTTCCAATATCCACCAAACCATAATGTGGTTGAAGTTACAAAATCAGATTATGAGTCATGCGAGCAAACAAATCCAATTCAATCTTCCAATGATGGTGCCACAACCATTCCTCTCACATCACAAGGCAAAAGATACTTCATTTGTGGAACAATAGGGCATTGCAGCCAAGGAATGAAAGTTGAAATAAACACACTTGCCACTCAAATCTCTCCTACCTCTCCAGCTATAGCATCTCCTCCAACAGCAGCATCTCCTCCAATAGAAGATTCTCCAATTGTTTCCATCATTCCCTCTGCAGCTCCACAAGAAACTACTACTCCTTCACCTGCAGAATCTCCTGAATCACCAAGTCCCTTGTTCCAAACACAAATGGAAACTCCTACATTATCTCCGATTATTCCTTCCACTGAATTGGCATATGTGAAGCAAAACAAAAGTATAAAAGCATGA 954 0.3868 MNKNKFPFFTPSQWQELEHQALVYKYMASGISIPPDLLFTIRKSFLDSPLSSTLLPNTQQHHFGWNYLQMGLGRKIYPEPGRCRRIDGKKWRCSKEAYPDSKYCERHMHKGKKCSRKPLELLKTTTNNASTQHQGHQYLLVLVCHLKTIMVPCFLTVTLALRIMEITVFQYPPNHNVVEVTKSDYESCEQTNPIQSSNDGATTIPLTSQGKRYFICGTIGHCSQGMKVEINTLATQISPTSPAIASPPTAASPPIEDSPIVSIIPSAAPQETTTPSPAESPESPSPLFQTQMETPTLSPIIPSTELAYVKQNKSIKA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04958 317 CDD Phytocyanin 168 231 - -
Vifa4g04958 317 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g04958 317 Pfam WRC 78 119 IPR014977 -
Vifa4g04958 317 PANTHER GROWTH-REGULATING FACTOR 5 8 132 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa4g04958 317 Pfam Plastocyanin-like domain 166 226 IPR003245 GO:0009055
Vifa4g04958 317 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g04958 317 SUPERFAMILY Cupredoxins 166 231 IPR008972 -
Vifa4g04958 317 ProSiteProfiles Phytocyanin domain profile. 168 234 IPR003245 GO:0009055
Vifa4g04958 317 MobiDBLite consensus disorder prediction 266 300 - -
Vifa4g04958 317 Gene3D - 158 232 IPR008972 -
Vifa4g04958 317 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa4g04958 317 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04958 Vifa-Chr4 1559626105 1559627673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04958 7 120 GRF Transcription Factor Family AT3G13960 64.912 5.90e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa4g04958 Cu_bind_like 4.5e-18 CL0026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04958 - - vun:114162468 231.876