Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04932 ATGAAGAGATTGAGGTCAAGCGAAGATCTTCACTCGTACAACAACGGTGGTGATAAGAGCGGTGATAAGAACGGTGATAAGAATGCTGAGAAGAATGGTGATAAGAATGGTTTTAAGGATTCGAATCTGAACCGTTCGTTTTCTTCTACTGGTCAGAGGAGCTTTTACTACAAACAAGAGAATGTTCGTAAGGGTTTGATGTCGTCGTCTTCGTCGCGATACGAGAGGGATCGGACGGTGGAGGAAGATCGGGAGGGTTCGAGAATTGTTCGGAAACGATCTGACCATGATTTTGATGGTTTTGATCGGAGGAAGGGTTTTGATCGGTATAGTCGGGATGGCGGTGGTGGTGGTGGTGGTTACAGCGGGGGTGGAAGTGGAGAGAGGAATTCGATTCATAGGTCGGAGAGTTTCAGTGGACCGAGGAGGGAGTTTCCGAAGGGGTTTCGTTCGGAGAGGGATCGGTCGAGAAGGGAGGGGAGTGTGTCTTCGTGGAGGAGAGGGTTGAAGGATTTTGATGAGAGTAGTAGAGGGAGTGGTGGTAGAGTTGAAGAGAGGGTAGTGCGTTCGCCCAAGGGGGGTTTTCCGAAGGAAGTGAAATCGCCTAGTTGGTCCAAGGATTCCGAGAGTGAACAATCCAAGAAGAGATCTTCTTCTTCTCCAAGGGTGTTTAGAGATGCTAAGTCAGTATCGAAGTCACCTTCTGTGTCTAAGGATTCGGAAAGTGCACAGTCCAAGAGTGTTAGTGTTGAGGTGAAGAAAACTGAAGAGTTATTGCAACAGGTTCAGAGTGGAAGCGGTAGCGAAATGGAAGAGGGGGAGCTTGAACCTGAACCGGTCCCTAACTCCGAGCCCAAACCGGCTGCTAAAGATGCTGCAGCTGGAAGTGAAATCCAGCAAACCTCTGAACACAAACAAGTTCATCAGCAGAATGAAGGCCGTTTGACTGATGCAGATGTTGTTATGGAAGAAAAACAGATGTTGTCGAACACTATGGAGGATGTTGATTCTGAGGTAAAAGATGCAGAAAAAGAACTTCATGAATTGCCTAAGACTCAAGATGCTTCAATTAAGGAAATGCATTCTACTGAGACTGTGATTGGAACTGTTGATAAGGATAAAGATAAGAAGGATGCAAGTTTGAATGGTGATGATACTCAGAAGGAAGAAACAGAGAAGAAAACAAATAAGAAGAATGCATTGCTTAATGAAGAGGAGTGCGAGGTGGACAAGGGTGTATATAGTGGTGACAAATCTGAGTTAAATGCTCAAGGCTCAACTGAGAATGCAGTTGCCGAAGAAGTGAAGAGAGAACCAATGACGGAGAGTGTGACCAACATTGCCAAGGATAAAGGAAAAAGTGTCTCGGTCACACCTGATGTTGCTCATTCTTCAGAAGATAGTTTGTGGATTGATAGAGGGTCGAAAGATCTCACAACATGTCCTGTAGATGCCATGGAAGGTCCGAGCACTAGAGGATTTGAGCTTTTCTCTAGATCTCCTGTGAGAAAAGTAGAAAAGTCTACTCGCATGGTTCTAAAAGAGGAGAATGATGACAGTCTTGCATTGGGGCAGCTTAATCTTACCCTTAGCTTGCCAAATGTTCTGTTACCGATAGGAGCTCAGGAGACAACAGCACAAGCCCCTGGGTCTCCTGGTCAAGCACGGAGTGTTCAGTCTCTAAGTAATACATTTTGTACTAACTCAGATGGTTTCACTGCATCAATGTCATTTTCAGGTTCCCAATCACTATATCACAATCCAAGTTGTTCTCTTACGAGAAATTCAGTGGACTATGAACAATCTGTTGGCAAATCGGTTGGCAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAAGGTGATCCCAAGCCAAAAGAAATTCCCTCTGGTCAGAGAACTTCAATGAATGGGAATGGCTCTCTTTACCAGCCTCAAGCATCATGGGGCGTTTTAGATACTCAAGCTTTGAAAGGTCAACATTCTAGGGCTCTAGAAGGAAGCTCAAAAATGGGCAGCGGGCTTGAGAGGCAGTTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACGGCATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAAGGAAAGAAGCAGTGGTAGTCTACATCGAAGTAGCAGTCAGAAGGGACAAGAACAATTTCAGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCAAGAATAGTATCTGAACCTGTGCTCCCGATGTCCCGAAAGTTTCATGAAATGAATGCACAGTACATAACTCGTCTGAAAGAGGGTTTTCGAGAACTCATGCTCAATTCAGATAACCATGGACAAATACTTGCTTTTCAAAAAGTTTTGCTGAACAGGTCTGATATATCCTTAGATGTTCTAATGAAGTGTCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTGTTTCTAAGCTTGAAGTGTAGGAATGTTACATGTCGAAGTCAGTTGCCTGTCGATGAATGTGATTGCAAGGTTTGTGCGCAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCGTCAAACACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCACACTGATTGTGGATTACGAGAATCTTATATTAGAAATGGGCTTACTACTGGAATCAATGGGACGACCGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAGCTTTGCGAAAGAGTGGTCGGTCGAATCTCTTCACAAGGAACTTGAATATGTGAAGAGGATCTTTTCTGCTAGCAAGGATATAAGAGGGAGACAGATGCACGAGATTGCAGATCAAATGCTGCCGAGGCTGACTAAGTCTAACCTTCCTGAGGTTTTGAGACACATCATGTCTTTCCTTTCTGATTGTGATTCTTCCAAATTAACCACCCCAACAAACTTTTCTGGGAAGGAACAAGTCAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTGAAATCTATTTATTCAGAAAAGCCACCACTATTATTAGAAAGACCTCCAAACATCCTTCCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGTTGCAGATGAATAGTGTTCAAAAGGACTTCTGTTTTGATGAATTAGAAAGCATAGTAAAAATCAAACACGCAGAGGCTAAAATGTTTCAATCTCGTGCTGATGATGCAAGGAGAGAAGCCGAAGGGTTGAGACGCATTGCCCTTGCAAAGAGTGAGAAAATTGAAGAAGAGTATACCAGTCGACTTGCCAAACTACGGTTCTCGGATACAGATGAATTGCGTAAACAAAAGATAGAAGAACTCCAAGCATTGGAGAGGGCACATCTGGAGTATTTGAACATGAAAAGGAGAATGGAGTCAGAGATTAAAGATTTGTTATCCAAAATGGAAGCTACTAAAATGAACCTTGCTATGTGA 3624 0.4341 MKRLRSSEDLHSYNNGGDKSGDKNGDKNAEKNGDKNGFKDSNLNRSFSSTGQRSFYYKQENVRKGLMSSSSSRYERDRTVEEDREGSRIVRKRSDHDFDGFDRRKGFDRYSRDGGGGGGGYSGGGSGERNSIHRSESFSGPRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGSGGRVEERVVRSPKGGFPKEVKSPSWSKDSESEQSKKRSSSSPRVFRDAKSVSKSPSVSKDSESAQSKSVSVEVKKTEELLQQVQSGSGSEMEEGELEPEPVPNSEPKPAAKDAAAGSEIQQTSEHKQVHQQNEGRLTDADVVMEEKQMLSNTMEDVDSEVKDAEKELHELPKTQDASIKEMHSTETVIGTVDKDKDKKDASLNGDDTQKEETEKKTNKKNALLNEEECEVDKGVYSGDKSELNAQGSTENAVAEEVKREPMTESVTNIAKDKGKSVSVTPDVAHSSEDSLWIDRGSKDLTTCPVDAMEGPSTRGFELFSRSPVRKVEKSTRMVLKEENDDSLALGQLNLTLSLPNVLLPIGAQETTAQAPGSPGQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTRNSVDYEQSVGKSVGSRPLFQGFDWQALSQGDPKPKEIPSGQRTSMNGNGSLYQPQASWGVLDTQALKGQHSRALEGSSKMGSGLERQLSFHKQLSGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKREVKERSSGSLHRSSSQKGQEQFQMGGLDFVKTIIARIVSEPVLPMSRKFHEMNAQYITRLKEGFRELMLNSDNHGQILAFQKVLLNRSDISLDVLMKCHRVQLEILVALKTGLTHYLHLDDNISSSDLAQVFLSLKCRNVTCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGLTTGINGTTEMQFHCIACDHPSEMFGFVKEVFQSFAKEWSVESLHKELEYVKRIFSASKDIRGRQMHEIADQMLPRLTKSNLPEVLRHIMSFLSDCDSSKLTTPTNFSGKEQVKENNGVAGPSQEAAWLKSIYSEKPPLLLERPPNILPRFDQNDKRTLVQELQMNSVQKDFCFDELESIVKIKHAEAKMFQSRADDARREAEGLRRIALAKSEKIEEEYTSRLAKLRFSDTDELRKQKIEELQALERAHLEYLNMKRRMESEIKDLLSKMEATKMNLAM 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04932 1207 Coils Coil 1170 1204 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 39 69 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 20 38 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 1 317 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 633 648 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 70 111 - -
Vifa4g04932 1207 Pfam PHD - plant homeodomain finger protein 857 979 IPR032881 -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 365 401 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 202 222 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 619 648 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 223 268 - -
Vifa4g04932 1207 Pfam Coiled-coil region of Oberon 1080 1195 IPR032535 -
Vifa4g04932 1207 CDD PHD_OBE1_like 887 945 IPR047578 -
Vifa4g04932 1207 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1205 IPR004082 -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 713 730 - -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 768 790 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 807 822 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 822 837 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 894 914 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1141 1163 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 848 869 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1102 1122 IPR004082 -
Vifa4g04932 1207 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 966 985 IPR004082 -
Vifa4g04932 1207 Coils Coil 325 345 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 347 401 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 414 460 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 135 193 - -
Vifa4g04932 1207 Coils Coil 388 408 - -
Vifa4g04932 1207 MobiDBLite consensus disorder prediction 685 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04932 Vifa-Chr4 1550778527 1550782797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04932 855 1004 PHD Gene Family AT5G57380 25.000 2.87e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04932 - - gmx:100817003 1503.8