Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04923 ATGGCATTTCACGTTGCTTGTCCAATTACATGTCGAAGAATCTGTTTCTGTGCGCTAGGGTTTCCGCGTTCTCTCAATGGAACCATCGCCAACGACGCTGCCAATGGTTTCCTCAACCACGTCTCTGTGCTCGGAGATTTCATTGCGGATGCGAGGACAGAGGACTCTACGATCCAAGTTACGGTTCCCAAGGTTGTGCCGCCGCCTCCTGAGGTTGTTCCTGTTGGCGGTGATGTGCTTGATGAGTCCGCGTCTATGAAAGCCAAGCGTGTTGCGCTTCAGAGGAAAGGTGCGGCTGCCATGATTGCGGCGGAGGAGTATGCCAGGAAGTTTGAGTCTGGTGATGTTCTGGATACATCAGGAAATCTTAATGGAGAAGAACTGGGTCAATCCAATGTTAAGGTCTTTTGTCGAATGTGTAATCGCGTTGAGAGTGAAGGAAGTGAGAAAGCGAAAAAGATGCTTTCTTGCAAAAGTTGTAGTAAGAAGTACCATAGGAACTGCTTGAGAAGTTGGTCTAATAATAGAGATTTATTTCATTGGAGTTCATGGACCTGTCGTGCTTGCCGAATATGTGAGGCTTGTAGACGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGATGTGATGGTGCTTACCACTGTTACTGTCTGCAACCTCCTCATAAGAATGTTAGTACTGGGCCCTATTTGTGCCCAAAACATACAAAGTGTCACAGTTGCGCATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTCTGGGATACACGTGCTGTGATGCATGTGGAAGATTGTTTGTGAAAGGAAATTACTGCCCTGTTTGTCTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATAATTGCCAACGCTGGGTACATTGTCAATGTGATAATATTAGTGATGAAAGATATCACCAATTTCAAGTAGATGGAAATCTGCAGTATACATGTCCTACTTGTCGTGGAGAATGTTATCAGGTCAAGAATCTCGAAGATGCTGTTCAAGAGCTTTGGAGGAGAAAGAATGACACGGATAGAGATTTAATTACCAGTCTGAGGGCTGCAGCTGGATTACCAACACAAGAAGAAATATTTTCTATTTCACCATATTCTGACGATGAGGATAGTGGGCCGTTAAAGTTAAAGAGTGATTCTGCACGTTCCCTTAAGTTCTCGTTTAAGAATTTTCCCAATAACTCACCTATTAAGATAAAAGATTATGGAAAGAAATCTTCAAACAAGAAGACTGCCAAGAAAAAGGATTCTCTGTCATACATGACTGGTAAAATTGATGCACACCATAGTTTTGAAGGACACAGTGATGTTAAATCTTTACATAGCTTGGATGATGATGACATGCAATCCCAGAGAAATGAAGGTCCTGATATTTATTCATCACCTGCTACTGGAAGCCTGAGTCAAACTGAATTATCTTTTCCTGTCAACCGTCCAAGTATTTTGAAACGTAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAAAGGAAAACCAGAGTTGTTCGAATTAAAAGCAATAAGGCAAATGTTTTGGATAGTGAAGAGGAGAGTGGAAAACATGGCGATAAGACTCAGAATGTAAAAGGGAAAAAGTTGGTTATAAATTTGGGAGCACGGAAAATCAATGTAGCTAGTTCTCCGCTTTCTGATAATGCAAGCTTCCAAAGAGATCAAGATCTGGTTAATGCAAATGGAAATGAAAATCTAGCCCATTTGATGAAGGGAAACAAGTATGCATTAGATAGACACGATGGAACGGCTAGACATGTTGAAGGTAAAGGAAGTAGGGTTGACTCTGGCCAATTAAAACATTTAAAGGTTTCAGGAAGAGAAGGAAATATGATCAAGTTGGGAAAAGTTAAGCCAAGTGTTTCTGAACTCAACTTCACCTCTGGTAGGGGCAATGTGTCTGATGGGTGTGAAGTTGATCCTTTAGAGCGATCTCACATTATGCGTGGTAAACGTAGTACTCATGGAATGAACAATCAAGTTGGATTAGATTCAACATCAAGAGGTGAAAGGACGTATTTGGCGAGGCAGTCTGAAGGTAGCTCTGATGTATATGACGAGACACATGACAATAATAACACATCTTCACATTCTTTGCCAAAAGATTCTAAACCATTACTGAGATTTAAATTCAAAAGGCCTAGCATTGAAAGTCAAAGTTCTCCCCATCAGGAAGAGGAGAAGACCACCGTCAAGGGTCAGAGGTCAAAAAGAAAGAGGCCTTCACCTTTTAAAGAAAAAACATTGTTTAATGACTCTGAAGGTGTTAGTCAATCTTCTGGAGATAATATAAATCACGAGAACATGGATGCAAACTGGATTTTGATGAAATTGGGAAGTGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGGCATCTGACAATTCTTGGCACAAGGGAGAGGTTACTGACACAGTTGAAGGCACCTCAAAGTTACATGTTACTTACGATGATGGAAAAGTGAGTATCTTGGAACTCAGAAAGCAGGGGGTCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAAACATGA 2583 0.4127 MAFHVACPITCRRICFCALGFPRSLNGTIANDAANGFLNHVSVLGDFIADARTEDSTIQVTVPKVVPPPPEVVPVGGDVLDESASMKAKRVALQRKGAAAMIAAEEYARKFESGDVLDTSGNLNGEELGQSNVKVFCRMCNRVESEGSEKAKKMLSCKSCSKKYHRNCLRSWSNNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTKCHSCASNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDNCQRWVHCQCDNISDERYHQFQVDGNLQYTCPTCRGECYQVKNLEDAVQELWRRKNDTDRDLITSLRAAAGLPTQEEIFSISPYSDDEDSGPLKLKSDSARSLKFSFKNFPNNSPIKIKDYGKKSSNKKTAKKKDSLSYMTGKIDAHHSFEGHSDVKSLHSLDDDDMQSQRNEGPDIYSSPATGSLSQTELSFPVNRPSILKRKFVDEVMVSDEERKTRVVRIKSNKANVLDSEEESGKHGDKTQNVKGKKLVINLGARKINVASSPLSDNASFQRDQDLVNANGNENLAHLMKGNKYALDRHDGTARHVEGKGSRVDSGQLKHLKVSGREGNMIKLGKVKPSVSELNFTSGRGNVSDGCEVDPLERSHIMRGKRSTHGMNNQVGLDSTSRGERTYLARQSEGSSDVYDETHDNNNTSSHSLPKDSKPLLRFKFKRPSIESQSSPHQEEEKTTVKGQRSKRKRPSPFKEKTLFNDSEGVSQSSGDNINHENMDANWILMKLGSDAIGKRVEVHQASDNSWHKGEVTDTVEGTSKLHVTYDDGKVSILELRKQGVRFVPQKQKRSKT 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04923 860 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 159 470 - -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 415 431 - -
Vifa4g04923 860 ProSitePatterns Zinc finger PHD-type signature. 137 189 IPR019786 -
Vifa4g04923 860 ProSiteProfiles Zinc finger PHD-type profile. 272 331 IPR019787 -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 665 782 - -
Vifa4g04923 860 FunFam PHD finger family protein 269 331 - -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 450 465 - -
Vifa4g04923 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 246 IPR013083 -
Vifa4g04923 860 ProSiteProfiles Zinc finger PHD-type profile. 134 192 IPR019787 -
Vifa4g04923 860 Pfam PHD-finger 274 329 IPR019787 -
Vifa4g04923 860 SUPERFAMILY FYVE/PHD zinc finger 125 190 IPR011011 -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 412 431 - -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 450 485 - -
Vifa4g04923 860 SMART PHD_3 274 329 IPR001965 -
Vifa4g04923 860 SMART PHD_3 191 237 IPR001965 -
Vifa4g04923 860 SMART PHD_3 136 190 IPR001965 -
Vifa4g04923 860 Gene3D - 796 843 - -
Vifa4g04923 860 CDD PHD_SF 136 189 - -
Vifa4g04923 860 FunFam PHD finger family protein 131 246 - -
Vifa4g04923 860 SUPERFAMILY FYVE/PHD zinc finger 272 330 IPR011011 -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 736 750 - -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 669 718 - -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 768 782 - -
Vifa4g04923 860 SUPERFAMILY FYVE/PHD zinc finger 181 242 IPR011011 -
Vifa4g04923 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 331 IPR013083 -
Vifa4g04923 860 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04923 Vifa-Chr4 1548417472 1548423980 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa4g04923 PHD 2.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04923 - - tpra:123921045 1451.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04923 4 1548417472 1548423980 Vifa4g04923 4 1548417472 1548423980 ECH