Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04914 ATGTCCAACAATAACCATAATCACACATTTCCAATTTCAGCTACTTTGTTCATTTTCTTGTTGTTAAATCTATGTCAAGAAACTTCAGGGCTAACACAATCTGAAGCCTTGTTAAAGTGGAAACAAAGTCTCCCTCAACAACCAATTCTTGATTCATGGATCATTAGCAACTCAACTTCAACTTCAACTTCAACACAAACACCATGTTCATGGAGAGGTATCACTTGTGATTCAACAGGAACTGTCACAATTCTAAACTTGGCATATACTGGACTTCAAGGTACTCTTAATCACTTAAACTTATCAGTTTTTCCAAACCTTCTTCGTCTTGATCTTAAAACAAACAATCTCTCCGGCGTCATACCTGAAAACATCGGTGTCCTTTCAAGACTCCAGTTTCTTGATCTTTCTACCAATTATCTCAACGGAACTTTGCCACTTTCTATATCCAATTTGACTCAAGTTTACGAGCTTGATGTTTCCAGAAACGATGTATCTGGTATATTAGACCCTCGGTTGTTTCCTGATAAGCCCACTTCTAAAACTGGGCTTATTGGCATCAGGAATCTTCTTTTTCAAGACACCCTCTTGGGTGGTCCATTACCTAACGAAATAGGAAACGTAAAAAACTTGACTTTACTAGCACTCGATGGAAACAATTTCTCTGGGCCTATTCCTTCATCTTTAGGAAACTGTCAACATTTAAGCATTCTTAGATTGAATGAAAACTATTTCACTGGACCGATTCCACCAAGCCTTGGCAAATTAACCAATCTAACTGATCTTAGGTTTTTCATCAACGAATTAAACGGTACCGTGCCACAAGAATTCGGAAACCTTTCTTCTTTGGTTGTTTTACATCTTGCTCAAAACAGTTTCATTGGTGAGTTGCCACCACAAGTGTGCAAAAGTGGAAAACTTGTGAATTTTAGTGCAGCATATAACAGTTTCACAGGTCCAATTCCTAGAAGTCTTAGAAATTGTCCTTCTTTGTATAGAGTTAGACTTGAATACAATGAGTTAACTGGTTATGCAGATCAAGATTTCGGAGTTTATCCGAATCTTACTTACATGGATTTCAGCTATAATAAGGTTGAAGGTGATTTATCTTCTAAGTGGGGATCTTGCAAAAACTTACAGTTACTTAATATGGCTGCTAATTCGGTGAATGGTAACATTCCGACTGAGATTTTTGAGTTGAAACAATTACAAGTGCTTGATCTATCCTTTAACCAATTATTAGGAACTATTCCTTCACAAACTGGAAACTCTTCGAATTTGAATACTTTAAATTTGGGTGGAAATAGGCTTTCTGGTAAGATACCGATCGAAATTGGAAAGCTTTCTAATTTGCAACATTTAGACCTTTCGATGAACATGTTGTTGGGAGAAATTCCATCTCAGATAGGAGGTTGTTCCAATTTGCTGAACTTAAATTTGAGTAATAATCACTTGAATGGAACAATTCCATTCCAAATTGGAAAACTTGCATCTTTACAAGACTTTTTGGACTTGAGTTACAATTCAATTTCAGGGGAAATTCCTTCTAGTATTGGTACGCTTTCGAATTTGATAAGCTTGAACATCTCAAACAATAATTTATCAGGTTCTATTCCTGATGAAATTGGTGGAATGTTGAGTTTATCAATTCTTAACCTCTCTTACAATAATTTAGAGGGTAGTGTTCCTAAAGGTGACAGTGGCATATTCAAAGTCAATTTTTCTCATGTTCTTGATTTCAGCAACAACCAAGGTCTATGTGGTGAATTCCAAGGTTTGAAACCTTGTAATATCTCACTCATGGAACCTAGTGATGGAAGTAACAAAAAAAAGATTTGGATTCCAATTGTTGCTTCTTTAGGAGGTGCACTTCTTCTATCATTGTTGCTTGTTGGTATATTTTTCTTGTGCTACAAGAAAAGTTCAAGAAGTCCAAGAATAAAAAAGCCTTCTTTTAATATACCAAATCCATTCTCAATTTGGTACTTCAACGGAAGAGTTGTATACGGCGACATAATTGAAGCTACCAACAATTTTGACGAGAGGTATTGTGTTGGCGAAGGAGCATTCGGGACTGTTTACAAAGCTGAACTTAAAGGAGGTCAAATATTCGCGGTGAAAAAGTTGAAATGCGATGAAGAGAGTTTAGACACTGAAAGCATAAAAACATTTGAAAATGAGGTTGAGGCTATGACAGAAACAAGGCACAGGAACATTGTGAAGCTTTATGGATTTTGTTGTGAAGGGATGCATACATTTCTTGTTTATGAGTATATGGATAAAGGGAGTTTGGCTGATATGTTGATGGATCATAAGAAAGCACTAGAACTTGGTTGGGCTAAAAGGTTTGAGATTGTTACAGGTGTTGCAAGTGCACTCTCTTATATGCATCATGATTGTTCACCACCTTTGATTCATAGAGACATATCAAGCAAGAACATTTTGTTATCTTCAAATCTTGAAGCTCATGTATCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAACTCGCCTATTTGGACTTCATTTGCTGGCACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCGGTGACAGAGAAGTGCGATGTGTTTAGCTTTGGTGTTTTAGCATTTGAGATTCTAACTGGAAAACATCCGGGTGATCTTGTTTCTTACATACAAACTTCGAATAATCAAAAGATAGATTTCAAAGAGATTTTAGATCCTCGTCTACCTTCTCCTCCGAAGAATATTTTAAAGGAGTTGGTTTTGGTTGGAAACTTGGCTCTTTCTTGTTTACACACAAATCCTCAGTCTAGACCTACCATGAGAAATATTGCCCAATTCCTAGAAATGGAGACTACATTATAA 2859 0.3659 MSNNNHNHTFPISATLFIFLLLNLCQETSGLTQSEALLKWKQSLPQQPILDSWIISNSTSTSTSTQTPCSWRGITCDSTGTVTILNLAYTGLQGTLNHLNLSVFPNLLRLDLKTNNLSGVIPENIGVLSRLQFLDLSTNYLNGTLPLSISNLTQVYELDVSRNDVSGILDPRLFPDKPTSKTGLIGIRNLLFQDTLLGGPLPNEIGNVKNLTLLALDGNNFSGPIPSSLGNCQHLSILRLNENYFTGPIPPSLGKLTNLTDLRFFINELNGTVPQEFGNLSSLVVLHLAQNSFIGELPPQVCKSGKLVNFSAAYNSFTGPIPRSLRNCPSLYRVRLEYNELTGYADQDFGVYPNLTYMDFSYNKVEGDLSSKWGSCKNLQLLNMAANSVNGNIPTEIFELKQLQVLDLSFNQLLGTIPSQTGNSSNLNTLNLGGNRLSGKIPIEIGKLSNLQHLDLSMNMLLGEIPSQIGGCSNLLNLNLSNNHLNGTIPFQIGKLASLQDFLDLSYNSISGEIPSSIGTLSNLISLNISNNNLSGSIPDEIGGMLSLSILNLSYNNLEGSVPKGDSGIFKVNFSHVLDFSNNQGLCGEFQGLKPCNISLMEPSDGSNKKKIWIPIVASLGGALLLSLLLVGIFFLCYKKSSRSPRIKKPSFNIPNPFSIWYFNGRVVYGDIIEATNNFDERYCVGEGAFGTVYKAELKGGQIFAVKKLKCDEESLDTESIKTFENEVEAMTETRHRNIVKLYGFCCEGMHTFLVYEYMDKGSLADMLMDHKKALELGWAKRFEIVTGVASALSYMHHDCSPPLIHRDISSKNILLSSNLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNNQKIDFKEILDPRLPSPPKNILKELVLVGNLALSCLHTNPQSRPTMRNIAQFLEMETTL 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04914 952 SUPERFAMILY Protein kinase-like (PK-like) 651 947 IPR011009 -
Vifa4g04914 952 SUPERFAMILY RNI-like 79 298 - -
Vifa4g04914 952 ProSitePatterns Tyrosine protein kinases specific active-site signature. 804 816 IPR008266 GO:0004672|GO:0006468
Vifa4g04914 952 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Vifa4g04914 952 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 239 947 - -
Vifa4g04914 952 Gene3D Ribonuclease Inhibitor 326 601 IPR032675 -
Vifa4g04914 952 Pfam Leucine rich repeat 503 558 IPR001611 GO:0005515
Vifa4g04914 952 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
Vifa4g04914 952 Gene3D Transferase(Phosphotransferase) domain 1 759 951 - -
Vifa4g04914 952 PRINTS Leucine-rich repeat signature 131 144 - -
Vifa4g04914 952 PRINTS Leucine-rich repeat signature 400 413 - -
Vifa4g04914 952 Pfam Protein kinase domain 684 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04914 952 FunFam Nuclear pore complex protein NUP107 31 175 - -
Vifa4g04914 952 ProSiteProfiles Protein kinase domain profile. 679 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04914 952 Gene3D Ribonuclease Inhibitor 32 325 IPR032675 -
Vifa4g04914 952 FunFam MDIS1-interacting receptor like kinase 2 759 952 - -
Vifa4g04914 952 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 273 - -
Vifa4g04914 952 SMART serkin_6 679 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04914 952 FunFam Leucine-rich repeat receptor-like protein kinase TDR 277 598 - -
Vifa4g04914 952 SUPERFAMILY RNI-like 249 588 - -
Vifa4g04914 952 SMART LRR_typ_2 128 152 IPR003591 -
Vifa4g04914 952 SMART LRR_typ_2 448 472 IPR003591 -
Vifa4g04914 952 SMART LRR_typ_2 521 545 IPR003591 -
Vifa4g04914 952 SMART LRR_typ_2 400 424 IPR003591 -
Vifa4g04914 952 SMART LRR_typ_2 208 232 IPR003591 -
Vifa4g04914 952 SMART LRR_typ_2 280 304 IPR003591 -
Vifa4g04914 952 FunFam Leucine-rich repeat receptor protein kinase MSP1 642 758 - -
Vifa4g04914 952 Gene3D Phosphorylase Kinase; domain 1 658 758 - -
Vifa4g04914 952 Pfam Leucine rich repeat N-terminal domain 32 77 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04914 Vifa-Chr4 1545724264 1545727340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04914 28 852 Receptor kinase-like Gene Family AT4G08850 39.305 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa4g04914 Pkinase 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04914 - - aprc:113866080 1372.45