Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04913 ATGTCCAACAATAACCATAATCACACATTTCCAATTTCAGCTACTTTGTTCATTTTCTTGTTGCTAAATCTATGTCAAGAAACTTCAGGGCTAACACAATCTGAAGCCTTGTTAAAGTGGAAACAAAGTCTCCCTCAACAACCAATTCTTGATTCATGGATCATTAGCAACTCAACTTCAACTTCAACTTCAACACAAACACCATGTTCATGGAGAGGTATCACTTGTGATTCAAAAGGAACTGTCACAGTGATAAACTTGGCATATACTGAACTTCAAGGTACTCTTCAACACTTAAACTTATCCGTTTTTCCAAACCTTCTTCGTCTTGGTCTTCAAACAAACTATCTCTACGGTGTCATACCTGAAAACATCGGTGTTCTTTCAAGACTCCAGTTTCTTGATCTTTCTAACAATTATCTCAATGGAACTTTGCCTCTTTCTATATCCAATTTGACTCAAGTTTACGAGCTTGATGTTTCCAGAAACTATGTATCTGGTATATTAGACCCTCGTTTGTTTCCTGATAAGCCCACTTCTAAAACTGGGCTTATCGGCATTAGGAATCTTCTTTTTCAAGACACCCTCTTGGGTGGTCCATTACCGAACGAAATAGGGAACGTAAAAAACTTGACTTTACTAGCACTCGATGGAAACAAATTCTCTGGGCCTATTCCTTCATCTTTAGGAAACTGTCAACATTTAAGCATTCTTAGATTGAATGAAAACAATTTCACTGGACCAATTCCACCAAGTCTTGGCAAATTAACCAATCTAACTGATCTTAGGTTTTTCATCAACAAATTAAATGGTACCGTGCCACAAGAATTCGGAAACCTTTCTTCTTTGGTTATTTTACATCTTGCTCAAAACAATTTCATTGGTGAGTTACCACCACAAGTGTGCAAAAGTGGAAAACTTGTGAATTTTAGTGCAGCATATAACAATTTCACAGGTCCAATTCCAAGAAGTCTTAGAAATTGCCCTTCTTTGTATAGAGTTAGACTTGAATACAATGAGTTAACTGGTTATGCAGATCAAGATTTCGGAGTTTATCCGAATCTTACTTACATGGATTTCAGCTATAATAAGGTTGAAGGTGATTTATCTTCTAAGTGGGGATCTTGCAAAAACTTACAGTTACTTAATATGGCTGCTAATTCGGTGAAGGGTAACATTCCGACTGAGATTTTTGAGTTGAAACAATTACAAGTGCTTGATCTATCCTTTAACCAATTATTAGGAACTATTCCTTCACAAACTGGAAACTCTTTGAATTTGAATACTTTAAATTTGAGTGGAAATAGGCTTTCTGGTAAGATACCGATCGAAATTGGAGAGCTTTCTAATTTGCAACATTTAGACCTTTCGATGAACATGTTGTTGGGAGAAATTCCATCTCAGATAGGAGGTTGTTCCAATTTGCTGAATTTAAATTTGAGTAATAATCACTTGAATGGAACAATTCCATTCCAAATTGGAAAACTTGCATCTTTACAAGACTTTTTGGACTTGAGTTACAATTCAATTTCAGGGGAAATTCCTTCTAGTATTGGTATGCTTTCGAATTTGATAAGCTTGAACATCTCAAACAATAATTTATCAGGTTCTATTCCTGATGAAATTAGTGGAATGTTGAGTTTATCAAGTCTTAACCTCTCTTACAATAATTTAGAGGGTAGTGTTCCTAAAGGTGACAATGACATATTCAAAGTCAATTTTTCTCATGTTCTTGATTTCAGCAACAACCAAGGTCTATGTGGTGAATTCCAAGGTTTGAAACCTTGTTATGTATCACTAAATGAACCTACTGGTGATGGAAGTGACAAGAAAAAAGTTGTGATTCCAATTGTTGCTACTTTAGGAGGTGCCGTTTTTCTTTTATTGGTATTATTTGTTTGCATATTTTTCTTATGCTGTAAGAAAAAATCAAGAACTCCAAGGTTAAAAGAGTCTTCATTTAAGATAACAAATCCATTTTCAATTTTGTACTTTAATGGAAAAGTAGTATACAGCGACATAATGGAAGCTACCAACAATTTCGATGACAAGTATTGCATCGGTGAAGGAGCATTCGGGAATGTTTACAAAGCCGAAGTGAAAGGAGGTCAAATATTCGCAGTGAAAAAGTTGAAATGTGATGAAGAGAATTTAAACACTGAGAGAATAAAAACATATGAAAGTGAGGTTGAAGCTTTGACAGAAACAAGGCACAGAAACATTGTGAAGCTTTATGGATTTTGTTTTGCAGGGATGCACACCTTTTTGGTATATGAATATATGGATAAAGGGAGTTTAGCTGATATGTTGATGGATGATAAGAAAGCATTGGAACTTGATTGGTTTAAAAGGGTTAATATTGTTACAGGTGTTGCAAGTGCTCTCTCTTATATGCATCATGATTGTTCACCACTTCTGATTCATAGAGACATATCAAGCAAGAATATTTTGGTATCTTCAAATCATGAAGCTCATGTCTCAGATTTTGGTACTGCATTGTTTCTCAAGCCAAATTCACCTATATGGACATCTTTTGCTGGAACATATGGCTATGCTGCCCCAGAGCTTGCATACACAATGGCAGTGACAGAGAAATGCGATGTATTCAGCTTTGGTGTTTTAGCACTTGAGACTCTAACAGGAAAACATCCCGGTGATTTTGTTTCTTACATACAAACTTCTAATGATCAAAATATAGACTTCAAAGAGATTTTAGATCCTCGTCTCCCTTCTCCTCCAAATAATATTTTGAATGGATTGGCATTGGTTGGAAATTTAGCTGTTTCTTGTTTACACACAAATCCTCAATCTAGACCAACCATGAGAAGCATTGCCCAATTGCTAGAAATAGAGACATCAAAACTGTGTATAACTCTTGATTGA 2883 0.3548 MSNNNHNHTFPISATLFIFLLLNLCQETSGLTQSEALLKWKQSLPQQPILDSWIISNSTSTSTSTQTPCSWRGITCDSKGTVTVINLAYTELQGTLQHLNLSVFPNLLRLGLQTNYLYGVIPENIGVLSRLQFLDLSNNYLNGTLPLSISNLTQVYELDVSRNYVSGILDPRLFPDKPTSKTGLIGIRNLLFQDTLLGGPLPNEIGNVKNLTLLALDGNKFSGPIPSSLGNCQHLSILRLNENNFTGPIPPSLGKLTNLTDLRFFINKLNGTVPQEFGNLSSLVILHLAQNNFIGELPPQVCKSGKLVNFSAAYNNFTGPIPRSLRNCPSLYRVRLEYNELTGYADQDFGVYPNLTYMDFSYNKVEGDLSSKWGSCKNLQLLNMAANSVKGNIPTEIFELKQLQVLDLSFNQLLGTIPSQTGNSLNLNTLNLSGNRLSGKIPIEIGELSNLQHLDLSMNMLLGEIPSQIGGCSNLLNLNLSNNHLNGTIPFQIGKLASLQDFLDLSYNSISGEIPSSIGMLSNLISLNISNNNLSGSIPDEISGMLSLSSLNLSYNNLEGSVPKGDNDIFKVNFSHVLDFSNNQGLCGEFQGLKPCYVSLNEPTGDGSDKKKVVIPIVATLGGAVFLLLVLFVCIFFLCCKKKSRTPRLKESSFKITNPFSILYFNGKVVYSDIMEATNNFDDKYCIGEGAFGNVYKAEVKGGQIFAVKKLKCDEENLNTERIKTYESEVEALTETRHRNIVKLYGFCFAGMHTFLVYEYMDKGSLADMLMDDKKALELDWFKRVNIVTGVASALSYMHHDCSPLLIHRDISSKNILVSSNHEAHVSDFGTALFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALETLTGKHPGDFVSYIQTSNDQNIDFKEILDPRLPSPPNNILNGLALVGNLAVSCLHTNPQSRPTMRSIAQLLEIETSKLCITLD 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04913 960 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 272 - -
Vifa4g04913 960 Gene3D Ribonuclease Inhibitor 370 465 IPR032675 -
Vifa4g04913 960 Gene3D Ribonuclease Inhibitor 272 369 IPR032675 -
Vifa4g04913 960 Gene3D Ribonuclease Inhibitor 177 271 IPR032675 -
Vifa4g04913 960 Gene3D Ribonuclease Inhibitor 466 597 IPR032675 -
Vifa4g04913 960 SUPERFAMILY RNI-like 80 298 - -
Vifa4g04913 960 Pfam Leucine rich repeat 503 558 IPR001611 GO:0005515
Vifa4g04913 960 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
Vifa4g04913 960 ProSiteProfiles Protein kinase domain profile. 681 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04913 960 FunFam MDIS1-interacting receptor like kinase 2 761 954 - -
Vifa4g04913 960 FunFam Nuclear pore complex protein NUP107 31 175 - -
Vifa4g04913 960 SUPERFAMILY RNI-like 249 588 - -
Vifa4g04913 960 FunFam Leucine-rich repeat receptor protein kinase MSP1 643 760 - -
Vifa4g04913 960 PRINTS Leucine-rich repeat signature 131 144 - -
Vifa4g04913 960 PRINTS Leucine-rich repeat signature 400 413 - -
Vifa4g04913 960 Gene3D Transferase(Phosphotransferase) domain 1 761 956 - -
Vifa4g04913 960 PANTHER LEUCINE RICH REPEAT KINASE 2 187 950 - -
Vifa4g04913 960 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Vifa4g04913 960 Pfam Leucine rich repeat N-terminal domain 32 77 IPR013210 -
Vifa4g04913 960 ProSitePatterns Tyrosine protein kinases specific active-site signature. 806 818 IPR008266 GO:0004672|GO:0006468
Vifa4g04913 960 Gene3D Ribonuclease Inhibitor 31 176 IPR032675 -
Vifa4g04913 960 SUPERFAMILY Protein kinase-like (PK-like) 656 949 IPR011009 -
Vifa4g04913 960 Pfam Protein kinase domain 684 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04913 960 Coils Coil 959 960 - -
Vifa4g04913 960 SMART LRR_typ_2 521 545 IPR003591 -
Vifa4g04913 960 SMART LRR_typ_2 280 304 IPR003591 -
Vifa4g04913 960 SMART LRR_typ_2 448 472 IPR003591 -
Vifa4g04913 960 SMART LRR_typ_2 400 424 IPR003591 -
Vifa4g04913 960 SMART LRR_typ_2 208 232 IPR003591 -
Vifa4g04913 960 SMART LRR_typ_2 128 152 IPR003591 -
Vifa4g04913 960 Gene3D Phosphorylase Kinase; domain 1 643 760 - -
Vifa4g04913 960 FunFam Leucine-rich repeat receptor-like protein kinase TDR 277 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04913 Vifa-Chr4 1545662962 1545665985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04913 28 854 Receptor kinase-like Gene Family AT4G08850 38.961 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa4g04913 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04913 - - aprc:113866080 1334.7