Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04909 ATGGCGGCATCTCGGCGTCTCCGGGAGCTGCAATCCCAACCTGGCAACAAGATCTGCGTCGATTGCTCCCAGAAGAATCCACAGTGGGCTTCAGTCTCCTACGGCATCTTCATGTGCCTTGAGTGCTCCGGCAAGCACCGTGGCCTCGGAGTCCACATCTCGTTCGTCCGATCTGTCACCATGGATGCCTGGTCCGAAATTCAGATCAAAAAAATGGAGGCCGGTGGTAACGACACTCTTAATACTTTCCTCGCACGGTATTCAATTCCCAAGGAAACCGATATCGTCACTAAGTATAACACCAACGCTGCTTCGGTTTATCGTGACAGGATCCAGGCGATCGCGGAAGGTCGATCATGGCGCGATCCGCCGGTTGTTAAGGAGAATATTGGTTCCGGAAAGGGGAGGCCGCCGGTGTCACAGACTCGCCGGAGTAGCGATTCCGGATGGGATGATTGGGGTAGAGAAGGAAATTCTGGAGGTTCGGTTGATGTCAGGAGTAAGTCGACTGGGGATTTTAGAAGCTTGAACGGTAGTGGTGCGCCGACGAGATCGAGGTCGACCGAGGATATTTACACGCGATCGCAGTTGGAGGCGTCTGCGGCTAATAAGGAGGGTTTTTTCGCAAAGAGGATGGCGGAGAATGAGTCGCGGCCGGAAGGACTTCCTCCGTCGCAGGGTGGGAAATATGTTGGATTTGGATCCAGTCCTGCGGCTTCTTCCAAGAGGAGTAATCCGCAAAATGACTATTTCTCAGTCGTTTCTCAGGGGATTGGTAAGTTGTCATTGGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTGGCACCAAAGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAACGAAACTGTCACTGTTAAAGTTGAGGAGTACACTAAAGAAAACTCCGATTGGAAGGCTGATAACTGGCAACGAAATGAGAGCGGTAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCAATTCTTCTACTGGAAGAGAACAGTCTTCATCAGGGCAATTCAAAACTCACAGTTCAAACTCTTGGGATGATTGGGACCAGAAAGATAGTTTGAAGGAAGAACCAGCTAAAGGATCGGCTCCCCATAATAATAACGATGCTGGTTGGGCTGGCTGGGATAACGCCAAAGATGATGGATTTGATAACTTCTATGATGGTACATCTAATAAGAAAACTGTTGGACATAATGGGAAATCAGATGACGCTTGGACTGGGGGTGGCTTTCTCTAA 1275 0.4918 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDTLNTFLARYSIPKETDIVTKYNTNAASVYRDRIQAIAEGRSWRDPPVVKENIGSGKGRPPVSQTRRSSDSGWDDWGREGNSGGSVDVRSKSTGDFRSLNGSGAPTRSRSTEDIYTRSQLEASAANKEGFFAKRMAENESRPEGLPPSQGGKYVGFGSSPAASSKRSNPQNDYFSVVSQGIGKLSLVAASAANVVQAGTKEITSKVKEGGYDQKVNETVTVKVEEYTKENSDWKADNWQRNESGRNGYYQDFNQENKGNSSTGREQSSSGQFKTHSSNSWDDWDQKDSLKEEPAKGSAPHNNNDAGWAGWDNAKDDGFDNFYDGTSNKKTVGHNGKSDDAWTGGGFL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04909 424 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Vifa4g04909 424 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Vifa4g04909 424 MobiDBLite consensus disorder prediction 304 424 - -
Vifa4g04909 424 Pfam Putative GTPase activating protein for Arf 5 103 IPR001164 GO:0005096
Vifa4g04909 424 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Vifa4g04909 424 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Vifa4g04909 424 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Vifa4g04909 424 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Vifa4g04909 424 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 298 423 IPR044519 GO:0005096|GO:0016192
Vifa4g04909 424 MobiDBLite consensus disorder prediction 162 194 - -
Vifa4g04909 424 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Vifa4g04909 424 CDD ArfGap_ArfGap1 3 117 - -
Vifa4g04909 424 MobiDBLite consensus disorder prediction 317 355 - -
Vifa4g04909 424 MobiDBLite consensus disorder prediction 213 250 - -
Vifa4g04909 424 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Vifa4g04909 424 MobiDBLite consensus disorder prediction 356 371 - -
Vifa4g04909 424 MobiDBLite consensus disorder prediction 122 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04909 Vifa-Chr4 1544700298 1544702911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04909 5 135 C2H2 Transcription Factor Family AT4G05330 40.602 1.34e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04909 K12492 - gmx:100792658 660.603