Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04908 ATGGCATTTCAATTTGGAGTGCTGTTTCTTCTTGTTTTGTTCATTTGTTTCAATGTCAATTCAGTGGATTCAGATGATGGGTCAACATTGTTAGACATAAAGAAGTCATTCAGGGATGTGGATAATGTTCTATATGATTGGACTGATTCATCAACATCAGATTATTGTGCTTGGAGAGGGATTTCATGTGATAATGTAACCTTCAATGTTGTTGCACTCAATCTTTCTGGACTGAATCTTGATGGTGAAATCTCGCCTTCCATAGGGAACCTTAAGAGCTTGGTCTCTATTGATTTGAAAGAAAACCGGTTATCAGGTCAGATACCAGACGAGATTGGTGACTGTTCATTGTTGCAAGACTTGGACTTGTCATTTAACGAAATCCGAGGGGATATACCATATTCGATTTCTAAGCTGAAACAATTGGAGAATCTGATTTTGAAGAATAATCAATTGATTGGACCAATTCCTTCAACGTTGTCTCAGATTCCTAATTTGAAGAATCTGGACCTTGCACAAAACAATCTTAGTGGTGAAATACCAAGGCTTTTATACTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGGGAACAACTTGGTTGGTTCATTATCTCCGGACATGTGTCAGTTAACTGCCTTGTGGTATTTTGATGTGAGAAACAATAGCCTCACAGGAAGTATTCCCGAAAACATAGGCAACTGTACTTCCTTCCAAGTCTTGGATTTATCTTACAACCAGTTAACCGGAGAAGTTCCATTCAATATCGGGTTTCTACAAATAGCAACCTTGTCATTGCAAGGGAATAAACTTTCCGGACATATTCCATCGGTGCTTGGTCTCATGCAAGCACTTGCTGTTTTAGACTTGAGCTGTAACATGTTAACTGGATCAATCCCTCCTATTTTGGGCAATTTGACTTACACTGAAAAATTGTACTTGCATGGAAATAAGCTGACCGGTTTCATTCCTCCGGAGCTTGGAAATATGTCGAAGCTTCATTATTTGGAATTGAATGATAATAATCTGAGTGGACATATCCCGCCGGAGCTTGGAAAGCTTACTGACCTATTTGACTTAAATGTTGCTAACAACAACCTTGAGGGGCCGATTCCTGGTAATATTAGCTCGTGTAAAAACCTAAACAGCCTAAATGTGCATGGCAATAAGCTGAATGGAACGATTCCCTCAACTTTCCAGAGCTTGGAGAGCATGACCTCTTTGAATCTTTCGTCAAACAACCTTCAAGGCTCAGTTCCAATTGAACTGTCACGGATCGGTAATTTGGATACATTGGATATTTCAAACAATCAATTAATCGGACCAATTCCTCCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAACGGTTTAACAGGACCTATTCCTGCAGAGTTTGGTAATCTCAAGAGTGTTATGGATATTGATCTGTCCCATAACCAACTCTCCGATTTTATTCCTGTGGAACTTAGTCAGCTTCAAAACATAGGATCCTTGAGGCTCGAATACAACGACTTGACCGGGGACGTGGCATCACTTGTAAATTGTCTTAGTCTATCTCTGCTTAATGTGTCCTATAACAACCTAGTTGGTCTTATTCCCACAAACAACAACTTTACCAGATTTTCACCAGACAGTTTCATTGGAAATTCTGGTCTTTGTGGTAATTGGCTGAATTATCCATGTCAAGGTTCTCACCCTACAGACCGAGTTACGTTATCGAAGGCGGCTATTCTTGGAATTACGCTAGGTGCCCTTGTAATTCTTCTGATGATTCTACTGGCTGCTTGCCGACCACACCATCCAGCTCCATATCCTGACGGATCACTCGAAAAACCAGGTGACAAAACATTTACTTTCTCACCTCCGAAACTAGTGATTCTTCATATGAACATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACTTGAGTGAAAAGTATATAATTGGAAGTGGAGCATCGAGTACAGTTTATAAATGTGTTCTAAAAAATTGCAAGCCAGTTGCCATAAAGAGGCTCTATTCTCACTATCCACAATATTTGAAAGAGTTTGAGACGGAACTTGGAACGGTCGGTAGCATTAAGCACAGGAATCTTGTTAGTCTCCAAGGTTACTCTTTGTCCCCTTATGGCCACCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACAAAATAAGAAGAAAAAACTTGACTGGAATCTGCGTCTAAAAATAGCACTCGGAGCAGCACAAGGACTTGCATATTTACACCATGATTGCAGTCCTCGCATCATACATAGGGACGTGAAATCGTCAAATATTTTACTAGATGCGGATTTTGAGCCTCATCTAACTGATTTTGGCATTGCCAAAAGTCTTTGCCCCACAAAGTCTCATACCTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCCAGAACTTCCCGACTCACCGAGAAATCCGATGTCTACAGCTATGGCATTGTTTTACTTGAATTGCTAACCGGGAGAAAAGCGGTTGACAATGAATCCAACCTCCATCATCTAATTTTGTCCAAGACAGCCAGCAATGCAGTAATGGAAACGGTTGATCCCGACATAACTGCCACATGCAAGGACCTAGGAGAAGTAAAGAAAGTTTACCAGCTTGCTCTACTATGCTCAAAGAGACAGCCAACCGACCGGCCAACAATGCACGAAGTATCACGTGTATTAGGAAGTCTCATCCCGTCAGTCACACCACCAAAACAACTAAACCCTCCACAGGTTGCATCTAACCCGTCCGCCAAAGTCCCGTGCTACATGGACGAGTATGCAAATCTCAAGACACCACACTTGGTGAACTGTCCTTCCATGAGCACCTCAGATGCTCAACTCTTCCTCAAGTTCGGAGAAGTAATCTCTCAGAACAGCGAGTGA 2958 0.4141 MAFQFGVLFLLVLFICFNVNSVDSDDGSTLLDIKKSFRDVDNVLYDWTDSSTSDYCAWRGISCDNVTFNVVALNLSGLNLDGEISPSIGNLKSLVSIDLKENRLSGQIPDEIGDCSLLQDLDLSFNEIRGDIPYSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKNLDLAQNNLSGEIPRLLYWNEVLQYLGLRGNNLVGSLSPDMCQLTALWYFDVRNNSLTGSIPENIGNCTSFQVLDLSYNQLTGEVPFNIGFLQIATLSLQGNKLSGHIPSVLGLMQALAVLDLSCNMLTGSIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMSKLHYLELNDNNLSGHIPPELGKLTDLFDLNVANNNLEGPIPGNISSCKNLNSLNVHGNKLNGTIPSTFQSLESMTSLNLSSNNLQGSVPIELSRIGNLDTLDISNNQLIGPIPPSLGDLEHLLKLNLSRNGLTGPIPAEFGNLKSVMDIDLSHNQLSDFIPVELSQLQNIGSLRLEYNDLTGDVASLVNCLSLSLLNVSYNNLVGLIPTNNNFTRFSPDSFIGNSGLCGNWLNYPCQGSHPTDRVTLSKAAILGITLGALVILLMILLAACRPHHPAPYPDGSLEKPGDKTFTFSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGSGASSTVYKCVLKNCKPVAIKRLYSHYPQYLKEFETELGTVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGQNKKKKLDWNLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTASNAVMETVDPDITATCKDLGEVKKVYQLALLCSKRQPTDRPTMHEVSRVLGSLIPSVTPPKQLNPPQVASNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04908 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 188 297 - -
Vifa4g04908 985 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Vifa4g04908 985 SUPERFAMILY L domain-like 23 343 - -
Vifa4g04908 985 CDD STKc_IRAK 658 921 - -
Vifa4g04908 985 ProSitePatterns Protein kinases ATP-binding region signature. 658 680 IPR017441 GO:0005524
Vifa4g04908 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Vifa4g04908 985 SUPERFAMILY RNI-like 204 538 - -
Vifa4g04908 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 187 - -
Vifa4g04908 985 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Vifa4g04908 985 SUPERFAMILY Protein kinase-like (PK-like) 630 917 IPR011009 -
Vifa4g04908 985 SMART serkin_6 652 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04908 985 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Vifa4g04908 985 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vifa4g04908 985 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 311 918 - -
Vifa4g04908 985 ProSiteProfiles Protein kinase domain profile. 652 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04908 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 298 570 - -
Vifa4g04908 985 Gene3D Ribonuclease Inhibitor 260 345 IPR032675 -
Vifa4g04908 985 Gene3D Ribonuclease Inhibitor 346 442 IPR032675 -
Vifa4g04908 985 Gene3D Ribonuclease Inhibitor 443 569 IPR032675 -
Vifa4g04908 985 Coils Coil 983 985 - -
Vifa4g04908 985 SMART LRR_typ_2 402 426 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 330 354 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 211 235 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 282 306 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 163 187 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 474 498 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 91 115 IPR003591 -
Vifa4g04908 985 SMART LRR_typ_2 450 473 IPR003591 -
Vifa4g04908 985 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Vifa4g04908 985 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Vifa4g04908 985 Gene3D Phosphorylase Kinase; domain 1 626 727 - -
Vifa4g04908 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 623 727 - -
Vifa4g04908 985 Gene3D Transferase(Phosphotransferase) domain 1 728 927 - -
Vifa4g04908 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 728 929 - -
Vifa4g04908 985 Pfam Protein kinase domain 655 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04908 Vifa-Chr4 1544019332 1544025334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04908 94 984 Receptor kinase-like Gene Family AT5G07180 64.350 0.0 1116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vifa4g04908 Pkinase 8.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04908 K20718 - gmx:100782307 1713.74