Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04900 ATGGGTTTTCGTTTACCTAGTATTCTACGATCATCATTTAGTGCAGGCCAAGCATCTAGCAAAGTGGAAGTCCCAAAAGGCTATCTCGCAGTTTACGTTGGAGAAAAAGCGAGGAGGTTCTTGATTCCAGTATCGTTCTTGAACGAACCTTTATTTCAAGAATTGCTTAGCCAAGCTGAAGAGGAATTTGGTTACTGTCATCCAATGGGCGGTCTTACAATTCCTTGCAAGGAAGATGTCTTCTTACATACAGCTTCTCGCTTGAACAACCTACGATTAATTCATACGGCAAAAAAATATCATATGAAAGTTAGCATAGAGCAATGTAGATTAACTTGTTAG 342 0.3947 MGFRLPSILRSSFSAGQASSKVEVPKGYLAVYVGEKARRFLIPVSFLNEPLFQELLSQAEEEFGYCHPMGGLTIPCKEDVFLHTASRLNNLRLIHTAKKYHMKVSIEQCRLTC 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04900 113 Pfam Auxin responsive protein 14 86 IPR003676 GO:0009733
Vifa4g04900 113 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 17 88 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04900 Vifa-Chr4 1541710528 1541710869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04900 23 81 Calmodulin-binding Proteins AT3G43120 59.322 9.62e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04900 K14488 - gmx:100500615 160.999