Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04898 ATGGGTTTCCGTTTACCTGCAGCTATTAGACGTGCTTCATTAAGTAGCAGTCAAACATCATCAAAAGTAGGGAATGTGCCAAAGGGATGTCTTGCAGTGTACGTGGGAGAAGAAATGAAGCGGTTTGTGATCCCCATGTCATACTTGAACCGAACATCATTTCAAGACTTGTTGAGTGAAGCAGAGAAAGAATTCGGATATGATCATCGAATGGGCAGCCTCACAATTCCTTGCACGGAAGATGTTTTCTTGCATATAACTTCTGGCTTCAATGATTTAATTGAAAGCTATAATGTTATAGGACTGCAAATGTATAGGACTGTTGACTTGAAACTCAATATTCAGAATAGCATATTTTTGTTACTTGTAGTTGTTTGTGGGTCCAAACATATACCTATCTCTTTTGAGCTGTTGTTCAATTGCTATCTATCTTCTGTTCTGGTCAGCATGACTAGCGACCAAGCCCTTGATATGTGTTCCTTGTAG 486 0.3951 MGFRLPAAIRRASLSSSQTSSKVGNVPKGCLAVYVGEEMKRFVIPMSYLNRTSFQDLLSEAEKEFGYDHRMGSLTIPCTEDVFLHITSGFNDLIESYNVIGLQMYRTVDLKLNIQNSIFLLLVVVCGSKHIPISFELLFNCYLSSVLVSMTSDQALDMCSL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04898 161 Pfam Auxin responsive protein 12 87 IPR003676 GO:0009733
Vifa4g04898 161 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 88 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04898 Vifa-Chr4 1540975138 1540975854 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04898 18 86 Calmodulin-binding Proteins AT5G20810 50.725 5.04e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04898 K14488 - gmx:112998546 132.494