Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04894 ATGGGGCTGATTCTTCATTATGTCAACCCTCTCAAGTTGATTTTGTTACTTTCTACTTTCTACACTTTATCAGATTGCTATGACCCTTTGGATCCAAATGGAAACTTTTCTATAACTTTTGACATTAACAACCGCTTGGACACCGGATATCTGGCAACGGTGACACTTGAAAATTATCATCAATATCGGCATGTAGACAAACCCGGGTGGAAACTAGGATGGACATGGGCTAACAATGAGGTGATATGGTCAATGAGTGGTGCAATTGCAACTAATAGAGGTGATTGTTCATCTTACAGTGGTTCTCAGATGCCACATTCATGCAAGAAAGATCCTATCATAGTTGATATATCTCCCGACGTCACACAAAACAGGTCGGGCCGTTGCTGTCGCGGTGGCATCCTCTCTGCCCGAGCTATCGACTCTCTCAGTTCATTAACTTCATTTGAACTCGAAGTAAGAAACTTGAACCAAAAAGAAAATTCAATTGGACAAGCACCTAAGAATGTTACATTCATGGCACCCGGTCCTGGTTACACTTGTAGCCCTTTTATGGTTACCGATCCCTCGGTGTCCTTAGATTTAGGAGGAGTGAGACAAGTTCCAGTTATAAGAACTTGGAAGTCAATATGTACATATTCAAGTTTCTTGGCAAACAAGTCACCAGTATGTTGTGTTTCCTTCTCAACGTTTTACAATCCTATCATCACGCCGTGTCGTAATTGCACTTGTGGCGGATGCAGGGAAGCAGATAAAAATACACTCTCTTGTATAAGGCCAAGTGATTCTCTGGGAGGATCGAATGATGAGAAAAACATAATCCAATGCACTGACCACATGTGTCCAATTCGAGTTCATTGGCATTTCAAGAACAATTATATGAATCAATGGAGGGTGAAGCTTACAATTTCGAACTACAATTTCAATATAAACTACTCAAATTGGAACGTCCTTGTTCAACATCCTGGTTTGAGCCAAAAAGCAACAGCTTATAGCTTCAATAGCACTAAACTTCCAACTCTTGTGGCAGATGGAGTTGCACTTTTTTGGGGAATAGATTATTTCAACAATGAATTATTGCATTCTAATAAGGATGGTGTAGGTTCTGTGACAACAGAGATACTATTGGAAAAAGATCAGAACTCATTCACATTGCAAAATGGATGGACATTTCCAAGAAGGATATATTTCAATGGTGAAAATTGTGACATGCCTTTACCTGACACATTTCCTATGTTACCAAATGGTAGCTACATTTTTAGACCAAATTGTCTTTCTTTTATTTTTTCATTAATTTCTTTGTTGCTTGTTCTATTAGTACTATAG 1326 0.3891 MGLILHYVNPLKLILLLSTFYTLSDCYDPLDPNGNFSITFDINNRLDTGYLATVTLENYHQYRHVDKPGWKLGWTWANNEVIWSMSGAIATNRGDCSSYSGSQMPHSCKKDPIIVDISPDVTQNRSGRCCRGGILSARAIDSLSSLTSFELEVRNLNQKENSIGQAPKNVTFMAPGPGYTCSPFMVTDPSVSLDLGGVRQVPVIRTWKSICTYSSFLANKSPVCCVSFSTFYNPIITPCRNCTCGGCREADKNTLSCIRPSDSLGGSNDEKNIIQCTDHMCPIRVHWHFKNNYMNQWRVKLTISNYNFNINYSNWNVLVQHPGLSQKATAYSFNSTKLPTLVADGVALFWGIDYFNNELLHSNKDGVGSVTTEILLEKDQNSFTLQNGWTFPRRIYFNGENCDMPLPDTFPMLPNGSYIFRPNCLSFIFSLISLLLVLLVL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04894 441 Pfam COBRA-like protein 50 214 IPR006918 GO:0010215|GO:0016020
Vifa4g04894 441 PANTHER PROTEIN COBRA 16 428 IPR006918 GO:0010215|GO:0016020
Vifa4g04894 441 PIRSF COBRA 3 441 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04894 Vifa-Chr4 1540198865 1540200645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04894 25 441 COBRA Gene Family AT3G29810 45.647 3.32e-134 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04894 - - ccaj:109801855 658.292