Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04884 ATGGAGAAGCTTGCTTCCATGCCGAATACTCGAAGAGACGCGATTCGAAAGCTGCACGCTTTTTTGGCTGAAGCTTGGGAGAATTTAGGTCCTTCTTTTCTTGAATCAGTGGCGCAGAATCAATTGGATGCGAGTTCGAGTGTGGGTGTCTTGCAGATGAATAAACAACAGGGGAAAGGAGCCACAGATGGAAAATCGAGTACGGATGCAAATGTATCCGAGCCACAGATGGAAAACATGAGTATGGATGAAAATGTAGCCGAGCCACAGATGGAAAACATGAGTACGGATGAAAATGTAGCCGAGCCACCGATGGAAAACCGGAGTACAGGTGAAAATGTAGCCGAGCCACAGATGGAAAACCGGAGTATGGATGCAACTGAGGCTAATCTTAATGAGACAGCTTCTGTCCATCAGAGTGATGCTCAGGAGACAGCTTCTGTCCATCAGTGTGATGCTCAGGAGACAACTTCTGTCCATCAGAGTGATGCTCATCGCCCTAACTTGATGGAACCCAATACTACTGCTCGTAGTCACGAGTGGGATGATTCGATAGATGGCTTGCAAGGAGAAACATCGCATCAGACTAGCAAATTTAGTTTGCCTAGTCCAAGGAGGAAGAAAGTTTCTCCATTGAAGGCGTATGAACCAAAAAACATCACAAAAAGGAGAAGGCCGAAAAAATGGAGTAAATTGGAAGAGGATACTCTAAGGACCGGAGTAAACAAATTTGGTAGAGGAAATTGGAAATTAATCCTTAACACTTATACATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAATGGAGAAATATGATGCGGTATGGAGGCCAATGA 840 0.4429 MEKLASMPNTRRDAIRKLHAFLAEAWENLGPSFLESVAQNQLDASSSVGVLQMNKQQGKGATDGKSSTDANVSEPQMENMSMDENVAEPQMENMSTDENVAEPPMENRSTGENVAEPQMENRSMDATEANLNETASVHQSDAQETASVHQCDAQETTSVHQSDAHRPNLMEPNTTARSHEWDDSIDGLQGETSHQTSKFSLPSPRRKKVSPLKAYEPKNITKRRRPKKWSKLEEDTLRTGVNKFGRGNWKLILNTYTFEERTEVDLKDKWRNMMRYGGQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04884 279 MobiDBLite consensus disorder prediction 49 80 - -
Vifa4g04884 279 ProSiteProfiles Myb-like domain profile. 221 274 IPR001005 -
Vifa4g04884 279 SMART sant 225 276 IPR001005 -
Vifa4g04884 279 MobiDBLite consensus disorder prediction 86 103 - -
Vifa4g04884 279 MobiDBLite consensus disorder prediction 188 203 - -
Vifa4g04884 279 CDD SANT_TRF 227 275 - -
Vifa4g04884 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 278 IPR017930 -
Vifa4g04884 279 SUPERFAMILY Homeodomain-like 223 275 IPR009057 -
Vifa4g04884 279 PANTHER MYB TRANSCRIPTION FACTOR 7 276 - -
Vifa4g04884 279 MobiDBLite consensus disorder prediction 49 118 - -
Vifa4g04884 279 Pfam Myb-like DNA-binding domain 227 273 IPR001005 -
Vifa4g04884 279 MobiDBLite consensus disorder prediction 133 212 - -
Vifa4g04884 279 MobiDBLite consensus disorder prediction 133 175 - -
Vifa4g04884 279 Gene3D - 218 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04884 Vifa-Chr4 1538047360 1538049828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04884 189 274 Single Myb Histone (SMH) Gene Family AT1G15720 42.045 5.74e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g04884 Myb_DNA-binding 6.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04884 - K11111 psat:127081272 349.362