Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04874 ATGGTGATATTCAAAATGAATCCATTCTCTGTAGTAGTAGTACTGATACTAGTCGCTATAGGATCATCAAGATGGTGCCTGGCAAATCTAGATCCGCCGCAATGCGGATGGCAAGCTGGTGGTGCATTGTGCCGTAATCAGTTATGTTGCAGTTATTGGGGTTTTTGTGGATCAACCGACTACTACTGTGGAAACGGTTGCCAAAGTCAATGTACCGGAAGCAGCCCTCCTCTTCCTCCTCCTATACTACCTCCAATTTTTCGTGCTCCTCCTCCTCCACCATCTCTATCTCCTCCACCTCCATCTCCTCCACCTCCACCACCTCCACCTCCATCTCCTCCTCCTCCACCTCCTCCATCTCTTCCTCCTCCACCACCTATACAAGAGTATCTCATCTCCAGAAGAGATTTCAACAATATGCTTAGGAATCGCGACAATATTGCATGTGAGGCGAGAGGATTTTACACATATGAAGCATTTGTGATAGCTGCCAGGACATTCCCCGAGTTCGGAAATGAAGGAAAGAGTGAAGCTGATAAAAAAAGAGACATTGCTGCTTTCTTTGGTCAAAGTTCTCACGAATCAAGTGGTAGACCAAGAATATGGTATCAAGGACCATTTGAATGGGGATATTGTAATGTGACATCAAGAAATCCCTTCGTCTACTGCGAACCAAGCTCTGAATTCCCATGTGCTCCTGGAAAAAAATACTTTGGTAGGGGTCCATTTAACTTACAAGGGAATGAATTATACGGAAAGTGTGGAAAAGCAATAGGTGTTGATTTGCTTAATAACCCAGACCTTGTAGCCACAGACCCTGTTATATCCTTCAAGACCGCTATATGGTTTTGGATGACACCTCCTCCGCAGTTGGACCGTGATTATATGCCACCCGGCCACGATGTTATGGTCGGAATATGGATCCCAACCAGTTTTGATATTGAAGAATTGAGATTTCCAGGATACGGGATGACAACGTACGTGTATTCCTATGTTATTAGAGGATACAAAATCTGTGGGATGAAGGTCACAACTGACATTGAGCTTAACCGAGTTGGATATTATAAGAGATATTGTGACATACTTAGAGTTGATTACGGAGATAATCTTAGTTGTGCTGCTTACAAGACACCTCGGATCCTAGCTTATCAATCTTCATAA 1161 0.4376 MVIFKMNPFSVVVVLILVAIGSSRWCLANLDPPQCGWQAGGALCRNQLCCSYWGFCGSTDYYCGNGCQSQCTGSSPPLPPPILPPIFRAPPPPPSLSPPPPSPPPPPPPPPSPPPPPPPSLPPPPPIQEYLISRRDFNNMLRNRDNIACEARGFYTYEAFVIAARTFPEFGNEGKSEADKKRDIAAFFGQSSHESSGRPRIWYQGPFEWGYCNVTSRNPFVYCEPSSEFPCAPGKKYFGRGPFNLQGNELYGKCGKAIGVDLLNNPDLVATDPVISFKTAIWFWMTPPPQLDRDYMPPGHDVMVGIWIPTSFDIEELRFPGYGMTTYVYSYVIRGYKICGMKVTTDIELNRVGYYKRYCDILRVDYGDNLSCAAYKTPRILAYQSS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04874 386 ProSiteProfiles Chitin-binding type-1 domain profile. 32 73 IPR001002 GO:0008061
Vifa4g04874 386 CDD ChtBD1_GH19_hevein 34 71 - -
Vifa4g04874 386 Pfam Chitin recognition protein 34 71 IPR001002 GO:0008061
Vifa4g04874 386 PRINTS Proline rich extensin signature 225 237 - -
Vifa4g04874 386 PRINTS Proline rich extensin signature 72 93 - -
Vifa4g04874 386 PRINTS Proline rich extensin signature 94 110 - -
Vifa4g04874 386 PRINTS Proline rich extensin signature 112 129 - -
Vifa4g04874 386 PANTHER CHITINASE-RELATED 31 373 - -
Vifa4g04874 386 Pfam Chitinase class I 131 372 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vifa4g04874 386 ProSitePatterns Chitinases family 19 signature 2. 275 285 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vifa4g04874 386 ProSitePatterns Chitin recognition or binding domain signature. 44 63 IPR018371 GO:0008061
Vifa4g04874 386 Gene3D - 33 74 IPR036861 GO:0008061
Vifa4g04874 386 CDD chitinase_GH19 132 372 - -
Vifa4g04874 386 Gene3D - 131 373 - -
Vifa4g04874 386 PIRSF Endochitinase 2 378 IPR016283 GO:0004568|GO:0005975
Vifa4g04874 386 ProSitePatterns Chitinases family 19 signature 1. 149 171 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vifa4g04874 386 SUPERFAMILY Plant lectins/antimicrobial peptides 34 81 IPR036861 GO:0008061
Vifa4g04874 386 SUPERFAMILY Lysozyme-like 130 375 IPR023346 -
Vifa4g04874 386 MobiDBLite consensus disorder prediction 82 129 - -
Vifa4g04874 386 SMART ChitinBD_3 34 71 IPR001002 GO:0008061
Vifa4g04874 386 Gene3D Endochitinase, domain 2 215 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04874 Vifa-Chr4 1534993822 1534994982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04874 34 372 Glycoside Hydrolase AT3G12500 43.695 4.88e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04874 K20547 - mus:103978702 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01324 1 214274270 214276718 Vifa4g04874 4 1534993822 1534994982 PCT