Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04871 ATGCCATGCCAACGTCCACTAGATAGGGAACATGACATCTCGCAGACAGTACATCATAATGCCTATCATGAAGATCCTTATGCTAAAGAGTTTGGTATCAAAATCAGTGATAAGCTCGCTCAAGTCGAAGCTCGCATCCTTCCTGCGCCATGGCTCAAATATCATGATACGGGCCGCGAAAAGGATTGCCTACCCCAAGTTGGACAATGGAATATGATGAATAAGAAAATGGTCGATGGGGGAGTAGTTAACAATTGGTTATGCATAAACTTTTCTAGGAGTGTGCAAGAGAGTACTGCACGTGGCTTTTGTAGTGAACTTGCCCGGATGTGTCAAATATCTGGCATGGAGTTTAATCCTGAACCAGTAGTTCCTCTACATAGTGGTCGTCCTGACCAAGTAGAGAAGGTTCTCCAAATGTGTTATCATGATGTCAAGACCAAGCTGCAGGGAAAGGAGTCCGAATTGCTCATTGTCATTTTGCCTGATAATAATGATTCTCTTTATGGTAACCTCAAGCGTATTTGTGAGACTGACCTGGGGATTGTTTCCCAGTGTTGTTTGACTAAAAATGTTTTTAAGTTGAACAAGCAGTACCTTGCTAATGTTTCATTGAAAATTAATGTTAAAGTTGGGGGTAGGAATACTGTGCTTGTTGATGCACTTTCACGACGCATTCCTCTAGTCGGTGACATACCTACTATAATTTTTGGAGCTGATGTGACTCATCCTCACCCTGGCGAGGATTCAAGTCCACCAATAGCAGCTGTTGTTGCTTCTCATGATTGGCCAGAAATCACCAAATATGCTGGTTTGGTTTGTGCCCAAGAACGTCGGCAAGAATTAATTCAAGACCTTTTCAAACAATGGGAAGATCCAGTCAGAGGAACATTGACCGGTGGAATGATCAAGGAACTTCTTATATCATTCCAGAGAGCAACTGGTCAAAAACCGCAGCGCATCATATTTTACAGAGATGGAGTGCCGAGAGGCCTTAGATGGTATTATTGA 1011 0.4273 MPCQRPLDREHDISQTVHHNAYHEDPYAKEFGIKISDKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVDGGVVNNWLCINFSRSVQESTARGFCSELARMCQISGMEFNPEPVVPLHSGRPDQVEKVLQMCYHDVKTKLQGKESELLIVILPDNNDSLYGNLKRICETDLGIVSQCCLTKNVFKLNKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVGDIPTIIFGADVTHPHPGEDSSPPIAAVVASHDWPEITKYAGLVCAQERRQELIQDLFKQWEDPVRGTLTGGMIKELLISFQRATGQKPQRIIFYRDGVPRGLRWYY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04871 336 Gene3D - 46 219 - -
Vifa4g04871 336 Pfam Mid domain of argonaute 65 140 IPR032473 -
Vifa4g04871 336 SUPERFAMILY Ribonuclease H-like 42 331 IPR012337 -
Vifa4g04871 336 ProSiteProfiles Piwi domain profile. 156 336 IPR003165 GO:0003676
Vifa4g04871 336 Gene3D - 225 332 IPR036397 GO:0003676
Vifa4g04871 336 Pfam Piwi domain 157 330 IPR003165 GO:0003676
Vifa4g04871 336 SMART Piwi_a_2 156 336 IPR003165 GO:0003676
Vifa4g04871 336 FunFam Argonaute 10 46 219 - -
Vifa4g04871 336 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 331 - -
Vifa4g04871 336 Pfam Argonaute linker 2 domain 8 54 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04871 Vifa-Chr4 1533920085 1533921095 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04871 3 331 Eukaryotic Initiation Factors Gene Family AT5G43810 76.292 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04871 K11593 - gmx:100780375 588.571