Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04868 ATGGATCACGAAATGGATGTCGAGAATATGGGGAACGAGGAAGATAGAGTAGGCATTCTAATATCATCAAGATCATCATCAACAACAACAGCAGGATCTGGATCTGGTATACGAGAGCCTCTCCTTGTCAAGAATAGCAGACTCAATACCACTTCTCAACATGCTATTGTTGGAGCCAATGTTTGTCCCATCGAAAGTCTCGACTACGAGATCATTGAGAATGACATATTCAAACAAGACTGGAGGTCTAGAGCAAAATCCGAGATAGTACAGTATGTCTACCTCAAATGGACCTTTGCACTTCTTATTGGATTAGGCACGGGCCTTACTGCATTTTTCAGTAACATTGGAGTTGAGAATATTGCCGGTGTCAAGCTTAATCTCACCAACGATCTCATGCTTAATCAAAAGTTTCGTCAAGCTTTTGCAGTGTTTGCTGGTTGTAACATGATTTTAGCCATCGCTGCAGCTGCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCTGGCATTCCTGAGGTCAAGGCATATCTCAACGGCGTTGATGCTCCTTCTATATTGGCTACAAGAACCCTCTTTGTAAAGATTTTTGGTTCAATTCTGGGAGTTGCAGCTGGTTTTGTTGTGGGTAAGGAAGGACCTATGGTGCATACCGGTGCTTGCATAGGTAATTTACTTGGACAAGGTGGGTCTACAAAATATGGACTGACCTGGAAAGGGTTCAAACAATTTAAAAACGACAGGGACCGAAGGGATTTGATCACATGTGGTGCGGCTGCTGGTGTTGCTGGTGCCTTCCGTGCCCCGGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTCACTACAGCTGTAGTAGCTGTAGTGCTGAAATGTTTCACGGAATATTGCAAGGGTGGAAACTGTGGTCTTTTTGGAGAAGGAGGTTTGATCATGTTTGAGGTTAATTATGCAAAGCCGTCATACAGTATACCTGATCTACTTGTAGTTATATTTCTTGGAGTTGTTGGAGGTCTTCTGGGAAGCCTTTACAATTATCTCGTCGATAAGGTCCTTCGCACCTACAGCATCATTAATGAGAGAGGGCCTATATTTAAAGTAATACTCGTGATGATTATATCGTTTTTGACCTCTTGCTGTTCATTTGGTGTCCCGTGGCTATCGAAGTGCATCCCTTGTCCTCCTCAAGCAGGGGATCAGTGCCCAACCGTAGGGCGTTCCGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTGGCCTCTCTCTTTTTTACCACCAATGATGATGCTATCCGCAACCTCTTTATTGCTGGCACTGACAAAAGATTCCTGCTCTCCAGTCTCCTAATATTCTTTGTGGCTATCTACTTCCTCGGAATCATCACTTACGGAATTGCAATTCCCTCGGGGCTGTTTATTCCAGTGATTCTTGCAGGGGCGTCTTATGGCCGTGTTGCAGGAAGTTTATTAAGTCCATTCACAGTTCTGGATGTTGGTTTGTTTGCACTACTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACAGTTTCTCTCTGTGTCATACTTCTTGAACTCACTAACAACCTCCTCATGCTACCATTGGTCATGTTGGTACTCCTGATCTCAAAGTCCGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATAGTGGAAATGAAGGGGCTGCCTTATTTAGAAGCGCACGCAGAACCTTACATGAGGCAGTTAGCTGCGGGTGATGTGGTTTCTAGTCCGCTATTTACGTTCTCTGGGGTTGAAAAAGTGGGGAATATTCTGCACACTTTGAAGGTGACGCGACATAACGGCTTTCCTGTGATTGACGAGCCTCCGTTCTCAGATGAACCAGAGTTGTGTGGATTGGTATTGAGGTATCATCTGCTGGTGGTTCTTAAACACAAGGTATTTACCAAGAGCCAAAGGGGCTCGTCCTCCATTTTGAAAAGGTTGAACTCACATGATTTTGGAAAGCCAGGTGCAGGGAAGGGGATAAATCTGGATGAGTTAGATATATCAGAGGAGGAGACGGAAATGTATGTTGATCTGCATCATATTACCAACAGGTCAACCTATACGGTGTTGGAAACAACATCTCTAGCTAAAGCTTCTATTCTCTTCCGTGAGCTTGGCCTCAGGCACTTGTTGGTCGTCCCAAAGATACCTGGAAGACCTCCAATTGTAGGGATCCTGACAAGGCACGACTTGATGGCAGAACATGTATCCGGACTGTACCCTCACATCACCCCCACAAGGAAGCGGAGTTATTATCAAGAAACACATAGTCATTTATAG 2373 0.4496 MDHEMDVENMGNEEDRVGILISSRSSSTTTAGSGSGIREPLLVKNSRLNTTSQHAIVGANVCPIESLDYEIIENDIFKQDWRSRAKSEIVQYVYLKWTFALLIGLGTGLTAFFSNIGVENIAGVKLNLTNDLMLNQKFRQAFAVFAGCNMILAIAAAALCAYIAPAAAGSGIPEVKAYLNGVDAPSILATRTLFVKIFGSILGVAAGFVVGKEGPMVHTGACIGNLLGQGGSTKYGLTWKGFKQFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLKCFTEYCKGGNCGLFGEGGLIMFEVNYAKPSYSIPDLLVVIFLGVVGGLLGSLYNYLVDKVLRTYSIINERGPIFKVILVMIISFLTSCCSFGVPWLSKCIPCPPQAGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGTDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLAAGDVVSSPLFTFSGVEKVGNILHTLKVTRHNGFPVIDEPPFSDEPELCGLVLRYHLLVVLKHKVFTKSQRGSSSILKRLNSHDFGKPGAGKGINLDELDISEEETEMYVDLHHITNRSTYTVLETTSLAKASILFRELGLRHLLVVPKIPGRPPIVGILTRHDLMAEHVSGLYPHITPTRKRSYYQETHSHL 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04868 790 SUPERFAMILY Clc chloride channel 74 589 IPR014743 -
Vifa4g04868 790 Gene3D Clc chloride channel 88 586 - -
Vifa4g04868 790 SMART cbs_1 716 767 IPR000644 -
Vifa4g04868 790 SMART cbs_1 606 659 IPR000644 -
Vifa4g04868 790 ProSiteProfiles CBS domain profile. 713 777 IPR000644 -
Vifa4g04868 790 SUPERFAMILY CBS-domain pair 590 764 IPR046342 -
Vifa4g04868 790 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 765 - -
Vifa4g04868 790 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 PRINTS Chloride channel signature 260 279 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 PRINTS Chloride channel signature 196 215 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 PRINTS Chloride channel signature 165 182 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa4g04868 790 Gene3D - 587 768 IPR046342 -
Vifa4g04868 790 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa4g04868 790 PRINTS Plant CLC chloride channel signature 295 305 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa4g04868 790 PRINTS Plant CLC chloride channel signature 70 78 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa4g04868 790 PRINTS Plant CLC chloride channel signature 313 320 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa4g04868 790 PRINTS Plant CLC chloride channel signature 281 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa4g04868 790 FunFam Chloride channel ClC3 88 403 - -
Vifa4g04868 790 CDD ClC_6_like 65 586 - -
Vifa4g04868 790 Pfam CBS domain 713 763 IPR000644 -
Vifa4g04868 790 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 44 768 - -
Vifa4g04868 790 Pfam Voltage gated chloride channel 153 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04868 Vifa-Chr4 1533835995 1533838901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04868 36 778 Ion Channels AT5G49890 74.933 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04868 K05016 - cave:132178584 1100.5