Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04866 ATGTCAACTCACGAAGACGACCTCGATCTTCTGCTTTCTCTTCAAGACAAAGTTCCTGAAACCCCTCCTGCTTCTCCTTCACCGCTTGATTTTGATGGCGACGACGATTTTCTACCGCGGTGGGAGAGACCTGATATGTCCGTTTTCAAAGATGCAGTTCAGGATTGCCTTCTCAACCAACCCTCTAACCCTAACCCTAATCCTAATCCTAATCCTAAACCAAACAACAAATCTAAATCACTCGGCGAACTCGACAAATTCTCTGGTCTTCGCATAAGGGACCAATGTTTAACACCAGCTGAGCTTAGGGAACAACTTCAAGACATTCGTTTTGTTCGCCTACCTGTCATCAAGAATTTGGTGAATGGGGATACTTTCTCTGGAAATTGGGTAACTATTGGAGTGTTGACTGAGAAGGGGATTCAGAAAACAAGTTCAAATGGGAAGAGCTTTTGCATATGGAAAATTGGGTGTTTGGATGAAAATACTGTTCCTCTTTTCTTGTTTGGAAATGCTTATCAGAGGAATTGCCAAGAGAAGGCAGGAACGGTCTTTGCACTCTTTAATTGTGGTGTTCGCAAGGATGCCAAGGCTAATGGTTTTTCTTTGAGTATATACTCCCCTAACCAAATTGTGAAGATGGGCACCTCTGTAGATTACGGAGTTTGTAAAGCGAAAAGAGCGGATGGGGTGGCATGTACAATGGCTATAAATAAGCGTCAGGGGACTTATTGTAAATATCATAAATCAAAAACATCCGAGAAGTATTCCACCGTAAGAACTGAACTCAAAGGAGGAAACTTAAGGTCAGCATTTAGGCCTAGAGATTATCTCAAGTCAGAAGGAATATACTTAGTTGACCCCCTTGCCGACAAAACAAACATGAAGAAGTCTAAGCCAGTGAAATTGTTATCCGTCGATAGTCTCAGAAAGGCTTTGAGCAATGCAGGAAAAGTAACAACAGCTTCACACTCGCAAGGGATTAGATTTCTTTCGGAGGTTGCAGGTAAATTTGATCCAAACATGATGAAAAAAGGACCAAAGATTCTAAACGAACACAGCAAACAAACAGAGAAGAGGAAGTCATCTTATGTGACTACGGGATGCTCTACTGTCAATAAAAACCAACAGTCAGATGTAAAAAGGGTAAAAACAGAGGGGCAATGTTCTGTTGATAAAACCACAAAGAGTGCAATAAATATGATTGACTTAGATCTTATTAGTTCGGATGATGACTACTGA 1242 0.4114 MSTHEDDLDLLLSLQDKVPETPPASPSPLDFDGDDDFLPRWERPDMSVFKDAVQDCLLNQPSNPNPNPNPNPKPNNKSKSLGELDKFSGLRIRDQCLTPAELREQLQDIRFVRLPVIKNLVNGDTFSGNWVTIGVLTEKGIQKTSSNGKSFCIWKIGCLDENTVPLFLFGNAYQRNCQEKAGTVFALFNCGVRKDAKANGFSLSIYSPNQIVKMGTSVDYGVCKAKRADGVACTMAINKRQGTYCKYHKSKTSEKYSTVRTELKGGNLRSAFRPRDYLKSEGIYLVDPLADKTNMKKSKPVKLLSVDSLRKALSNAGKVTTASHSQGIRFLSEVAGKFDPNMMKKGPKILNEHSKQTEKRKSSYVTTGCSTVNKNQQSDVKRVKTEGQCSVDKTTKSAINMIDLDLISSDDDY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04866 413 Pfam Primase zinc finger 215 258 IPR015408 GO:0005634|GO:0006260
Vifa4g04866 413 FunFam DNA replication licensing factor mcm10 76 250 - -
Vifa4g04866 413 MobiDBLite consensus disorder prediction 59 81 - -
Vifa4g04866 413 MobiDBLite consensus disorder prediction 1 38 - -
Vifa4g04866 413 PANTHER PROTEIN MCM10 HOMOLOG 43 361 IPR040184 GO:0003690|GO:0003697|GO:0006270
Vifa4g04866 413 Gene3D - 75 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04866 Vifa-Chr4 1533257356 1533260457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04866 17 412 Core DNA Replication Machinery Family AT2G20980 51.990 2.59e-123 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04866 K10736 - gmx:100527758 518.079