Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04857 ATGTCTAAGGAAGTGAGTGAAGAAGGTCACCAACCTCATCACAGTGGAAAAGACTATGTTGACCCACCACCAGCACCTCTTCTCGACTTCGCTGAACTCAAGCTCTGGTCCTTCTACAGAGCTCTCATCGCTGAGTTCATAGCAACTCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATTGGTCACAAGAAACAAACCGGACCCTGCGACGGTGTTGGCCTTCTCGGCATAGCATGGTCCTTCGGTGGCATGATATTCGTCCTCGTTTACTGCACCGCAGGTATCTCCGGTGGCCACATCAACCCTGCAGTCACATTCGGCCTCTTCTTAGCTCGTAAGGTTTCTCTTATAAGAGCTGTTTTATACATTATCTCACAGTGCTTAGGTGCTATTTGTGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCACCCTTACAACCACCTCGGCGGTGGTGCTAACTCTGTTGCTTCTGGTTATACCAAAGGCTCAGCACTTGGCGCTGAGATTATCGGAACTTTTGTGCTTGTTTACACCGTTTTCTCTGCTACTGACCCTAAGAGAAGCGCACGTGACTCTCATATTCCTGTTTTGGCTCCTTTGCCTATTGGTTTTGCTGTTTTCATGGTTCATCTCGCAACTATACCTATCACCGGTACCGGAATTAACCCTGCCAGAAGCTTTGGTGCTGCTGTTATCTTCAACAATGCCAAAATTTGGGATGACCAATGGATTTTCTGGGTTGGACCGTTTGTCGGAGCGGCGGCTGCGGCGGCGTACCATCAGTATATTCTGAGAGCGGCGGCTATCAAGGCGTTGGGGTCGTTCAGAAGCAACCCGACCAACTAA 849 0.4971 MSKEVSEEGHQPHHSGKDYVDPPPAPLLDFAELKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIISQCLGAICGVGLVKAFMKHPYNHLGGGANSVASGYTKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNAKIWDDQWIFWVGPFVGAAAAAAYHQYILRAAAIKALGSFRSNPTN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04857 282 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Vifa4g04857 282 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g04857 282 MobiDBLite consensus disorder prediction 1 17 - -
Vifa4g04857 282 Gene3D Glycerol uptake facilitator protein. 25 282 IPR023271 -
Vifa4g04857 282 NCBIfam MIP family channel protein 44 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 FunFam Probable aquaporin PIP1-2 25 280 - -
Vifa4g04857 282 CDD MIP 40 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 271 IPR034294 -
Vifa4g04857 282 Pfam Major intrinsic protein 33 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa4g04857 282 SUPERFAMILY Aquaporin-like 32 266 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04857 Vifa-Chr4 1530788805 1530789773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04857 1 282 Major Intrinsic Protein MIP AT4G35100 90.071 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04857 K09872 - thj:104804325 519.62