Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04812 ATGGCTGACATTGACTGGCCAAAGAATGATAACCGTCGATTTCTTCATGTTGTTTACCGTGTCGGTGACCTTGATCGCGCCATCAAGTTTTATACTCAAGCTCTTGGAATGAAGCTTTTGAGACAAAGAGATGTTCCAGATGAGAAATATGCTAACGCTTTTGTTGGATTTGGCGATGAAAAATCACATTTTTCTATTGAATTAACATATAATTATGGAGTGAGTTCTTATGATGTTGGAGATGGCTTTGGACATTTTGGAATTGCAACACAAGATGTTTACAAATTGGTTGAGCACATTCGGGCTTTTGGTGGAAACATCACTAGGGAGGCTGGTCCAGTTCAGGGCGGAACAACTGTTATCGCCTTTGTGAAGGATCCTGATGGCTACACTTTTGCACTCATCCAAAGATCTGTAATTGTTGATCCTTTTGCTCATATCACGCTCCGCGTTGGTGATTTAGAACGCGCCATAAAGTTTTATGAAAAGGCTTTGGGCTTGAAGGTGGTGAGGAAGAATGATAATCCTGAGAGCAAGTACACTGTTGCTGTACTTGGGTATAAAGGGGAGGAAGAGTCAACTGTGTTGGAGTTGACATATAACTACGGTGTCACCGAGTACTCTAAGGGAAATGCTTATGCGCAGATTGCAATTGGTACCGATGATGTATACAAAAGCGCTGAGGTATTAACCCTAGTCACGCAAGAACTTGGAGGGAAGATCACTCGGCAAGCAGGACCACTTCCCGGCCTTAACACGAAAATTGTTTCATTTCTTGACCCAGATGGATGGAAAACTGTGTTGGTTGACAATGAGGATTTACTGAGGGAGCTGGAGCAGGAGTGA 846 0.4303 MADIDWPKNDNRRFLHVVYRVGDLDRAIKFYTQALGMKLLRQRDVPDEKYANAFVGFGDEKSHFSIELTYNYGVSSYDVGDGFGHFGIATQDVYKLVEHIRAFGGNITREAGPVQGGTTVIAFVKDPDGYTFALIQRSVIVDPFAHITLRVGDLERAIKFYEKALGLKVVRKNDNPESKYTVAVLGYKGEEESTVLELTYNYGVTEYSKGNAYAQIAIGTDDVYKSAEVLTLVTQELGGKITRQAGPLPGLNTKIVSFLDPDGWKTVLVDNEDLLRELEQE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04812 281 NCBIfam lactoylglutathione lyase 14 138 IPR004361 GO:0004462|GO:0046872
Vifa4g04812 281 ProSitePatterns Glyoxalase I signature 1. 16 37 IPR018146 GO:0004462|GO:0046872
Vifa4g04812 281 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 143 271 IPR037523 -
Vifa4g04812 281 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 12 137 IPR029068 -
Vifa4g04812 281 PANTHER LACTOYLGLUTATHIONE LYASE 4 279 - -
Vifa4g04812 281 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 14 133 IPR004360 -
Vifa4g04812 281 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 145 265 IPR004360 -
Vifa4g04812 281 Gene3D - 140 279 IPR029068 -
Vifa4g04812 281 Pfam Tetratricopeptide repeat 149 168 IPR019734 GO:0005515
Vifa4g04812 281 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 13 137 IPR037523 -
Vifa4g04812 281 Gene3D - 1 138 IPR029068 -
Vifa4g04812 281 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 144 270 IPR029068 -
Vifa4g04812 281 ProSitePatterns Glyoxalase I signature 1. 146 167 IPR018146 GO:0004462|GO:0046872
Vifa4g04812 281 CDD GlxI_Ni 15 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04812 Vifa-Chr4 1519532675 1519534749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04812 149 270 Calmodulin-binding Proteins AT1G08110 27.211 4.63e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04812 K01759 - gmx:100793089 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04812 4 1519532675 1519534749 Vifa4g04812 4 1519532675 1519534749 ECH
Vifa1g09942 1 1626852847 1626858447 Vifa4g04812 4 1519532675 1519534749 ECH
Vifa4g04812 4 1519532675 1519534749 Vifa1g09942 1 1626852847 1626858447 PCT