Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04802 ATGGGTTGTCGCGGTAGCAAGGAGAAGAATCCCAACGAAGATTTTAGGGCCCGCCGTGGACCATCCAGCACCGTCGGCGGCGGTGGTGGAGGTGGTAGTACTAATAACACTCACTACCACAGTGTTCAATCATCTTCAAGTCATGTTCAGACTTCAACACCACCAAAACCTAACTCACACTCACAAGCTTCAACAACAGTGGTAACAACAAGGACAACAACACCAAATCCGAATCCAAAACCCTCGGTCACAACGCCTCACAATGTGAAAACTGCGCAGAAAACCGATACAGCTATATTAGGTAAACCTTTTGAAGATATCAAGAAGTTCTATAGTTTAGGTAAAGAATTAGGGCGAGGTCAGTTTGGGATTACGTATTTCTGCACTGAGATTTCCACTGGTTTAAACTATGCGTGTAAATCTATATTGAAAAGGAAGCTGGTGAGTAAAGCTGATAGGGAAGATATCAAGAGAGAGATTCAGATTTTGCAGCATTTATCTGGTCAACCTAATATTGTTGAGTTTAAAGGTGTTTATGAGGATAGATTCTCTGTGCATCTTGTCATGGAGCTTTGTGCCGGTGGAGAGTTGTTTGATAGGATTATTGCTCAAGGTCATTATTCGGAGAGAGCTGCTGCTTCTCTTTGTAGGGCTATTGTTAATGTTGTGCATATTTGTCATTTTATGGGTGTCTTGCATCGTGATTTGAAGCCCGAGAATTTCTTGCTGTCGAGTAAGGATGAGGGTTCCGCGCTTAAGGCTACTGATTTTGGACTTTCTGTCTTCATTGAAGAAGGAAAGGTTTACCGTGATATGGTAGGCAGTGCTTACTATGTTGCTCCTGAGGCATCATATTGTATATTCTCCTTAGTGGGGGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCTATATTGGAAGGCGAACTTGACTTTGTTAGTGAACCATGGCCATCAATATCTGAAAGTGCTAAAGATCTAGTCAGGAAGATGCTGACACCGGATCCAAAGAAAAGACTTACTTCTACACAAGTCCTTGAACATCCGTGGATGAGAGAAGGTGGAGAAGCATCTGATAAACCGATTGATAGTGCTGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAATTCAAGAAACTTGCATTGAAGGTTATGGCTGAAAATCTATCAGAAGAAGAGATTAAAGGTCTCAAGGCAATGTTTGCAAATATGGATACTGATGGTAGTGGTACCATCACCTATGAAGAATTGAAGACAGGCTTGGCTCGAATTGGATCTAGACTGTCGGAGACTGAAGTTAAGCAACTTATGGATGCTGCTGATGTTGATGGAAATGGGTCGATTGACTATCTTGAATTCATATCGGCCACAATGCACAGACACAGACTTGAACGGGATGAGCATCTTTACAAAGCATTTCAGTATTTTGATAAGGACAATAGTGGGCATATTACTAGAGAAGAATTGGAGACTGCCATGACAAAGCATGGAATAGCTGATGAAGCAACAATAAAGGATATAATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAGTTCTGTGCAATGATGAGAAGTGGAATGCCCCAACAGAACCAGGGACCACTATTTTAA 1641 0.4138 MGCRGSKEKNPNEDFRARRGPSSTVGGGGGGGSTNNTHYHSVQSSSSHVQTSTPPKPNSHSQASTTVVTTRTTTPNPNPKPSVTTPHNVKTAQKTDTAILGKPFEDIKKFYSLGKELGRGQFGITYFCTEISTGLNYACKSILKRKLVSKADREDIKREIQILQHLSGQPNIVEFKGVYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDEGSALKATDFGLSVFIEEGKVYRDMVGSAYYVAPEASYCIFSLVGVPPFWAETEKGIFNAILEGELDFVSEPWPSISESAKDLVRKMLTPDPKKRLTSTQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKFKKLALKVMAENLSEEEIKGLKAMFANMDTDGSGTITYEELKTGLARIGSRLSETEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGHITREELETAMTKHGIADEATIKDIISEVDTDNDGRINYEEFCAMMRSGMPQQNQGPLF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04802 546 SUPERFAMILY EF-hand 393 533 IPR011992 -
Vifa4g04802 546 Gene3D - 380 533 - -
Vifa4g04802 546 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Vifa4g04802 546 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Vifa4g04802 546 ProSiteProfiles EF-hand calcium-binding domain profile. 505 539 IPR002048 GO:0005509
Vifa4g04802 546 MobiDBLite consensus disorder prediction 1 96 - -
Vifa4g04802 546 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Vifa4g04802 546 Pfam EF-hand domain pair 472 534 IPR002048 GO:0005509
Vifa4g04802 546 ProSitePatterns Protein kinases ATP-binding region signature. 117 144 IPR017441 GO:0005524
Vifa4g04802 546 SUPERFAMILY Protein kinase-like (PK-like) 101 378 IPR011009 -
Vifa4g04802 546 FunFam Calcium-dependent protein kinase 1 362 537 - -
Vifa4g04802 546 MobiDBLite consensus disorder prediction 1 16 - -
Vifa4g04802 546 FunFam Maternal embryonic leucine zipper kinase 101 366 - -
Vifa4g04802 546 CDD STKc_CAMK 110 353 - -
Vifa4g04802 546 Gene3D Transferase(Phosphotransferase) domain 1 197 371 - -
Vifa4g04802 546 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Vifa4g04802 546 ProSiteProfiles Protein kinase domain profile. 111 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04802 546 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Vifa4g04802 546 FunFam Calcium-dependent protein kinase 1 113 196 - -
Vifa4g04802 546 MobiDBLite consensus disorder prediction 27 95 - -
Vifa4g04802 546 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Vifa4g04802 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 529 - -
Vifa4g04802 546 Pfam Protein kinase domain 111 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04802 546 Pfam Protein kinase domain 290 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04802 546 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Vifa4g04802 546 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vifa4g04802 546 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Vifa4g04802 546 SMART efh_1 508 536 IPR002048 GO:0005509
Vifa4g04802 546 SMART efh_1 437 465 IPR002048 GO:0005509
Vifa4g04802 546 SMART efh_1 473 501 IPR002048 GO:0005509
Vifa4g04802 546 SMART efh_1 401 429 IPR002048 GO:0005509
Vifa4g04802 546 Gene3D - 372 463 - -
Vifa4g04802 546 SMART serkin_6 111 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04802 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04802 Vifa-Chr4 1515223239 1515227511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04802 71 546 EF-hand Containing Proteins AT4G04720 75.304 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa4g04802 Pkinase 7.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04802 K13412 - gmx:100812843 823.157