Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04799 ATGAAGATCATTGCGGCATATTTGTTGGCCGTTTTGGGAGGTACCACAGCCCCTTCCGCAGTTGATGTCAAATGCATCCTAGGCTCAGTTGGAGTTGAGGGTGAGGATGAGCAGATAGAGTTGCTGTTGAGGGAAGTCAAGGGCAAAGATTTTGCGGAACTAATTGCCAGTGGAAGAGAGAAATTGGCTCCAGTTCCTTCTGGTGGAGGAGCTATTGTTGTTTCCGCTGTATCTGGTGGTGCTGCTGCGGCTGCTGCCGCACCTGCGGCTGAAGCAAAGGAAGAAAAGAAGGTCGAAGAAAAAGAAGAGTCTGATGATGATATGGGCTTTAGTTTGTTTGACTAG 345 0.487 MKIIAAYLLAVLGGTTAPSAVDVKCILGSVGVEGEDEQIELLLREVKGKDFAELIASGREKLAPVPSGGGAIVVSAVSGGAAAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04799 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa4g04799 114 Pfam 60s Acidic ribosomal protein 18 113 - -
Vifa4g04799 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa4g04799 114 Gene3D - 1 59 IPR038716 -
Vifa4g04799 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa4g04799 114 MobiDBLite consensus disorder prediction 90 104 - -
Vifa4g04799 114 MobiDBLite consensus disorder prediction 87 114 - -
Vifa4g04799 114 FunFam 60S acidic ribosomal protein P2 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04799 Vifa-Chr4 1513906676 1513907020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04799 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 74.286 9.62e-32 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04799 K02943 - csav:115697224 120.168