Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04798 ATGAAGATCATTGCGGCATATTTGTTAGCCGTTTTGGGAGGTAACACAGCCCCTTCCGCAGTTGATGTCAAACGCATCCTAGGCTCAGTTGGAGTTGAGGGTGAGGATGAGCAGATAGAGTTGCTGTTGAGGGAAGTCAAGGGCAAAGATTTCCCGGAACTAATTGTTAGTGGAAGAGAGAAATTGGCTTCAGTTCCTTCTGGTGGAGGAGCTATTGCTGTTTCCGCTGCATCTGGTGGTGCTGCTGCGGCTGCTGCCGCACCTGCGGCTGAAGCAAAGGAAGAAAAGAAGGTCGAAGAAAAAGAAGAGTCTGATGATGATATGTGA 327 0.4893 MKIIAAYLLAVLGGNTAPSAVDVKRILGSVGVEGEDEQIELLLREVKGKDFPELIVSGREKLASVPSGGGAIAVSAASGGAAAAAAAPAAEAKEEKKVEEKEESDDDM 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04798 108 Gene3D - 1 58 IPR038716 -
Vifa4g04798 108 Hamap 50S ribosomal protein L12 [rpl12]. 2 106 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa4g04798 108 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vifa4g04798 108 MobiDBLite consensus disorder prediction 85 108 - -
Vifa4g04798 108 CDD Ribosomal_P2 1 71 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa4g04798 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 108 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa4g04798 108 Pfam 60s Acidic ribosomal protein 18 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04798 Vifa-Chr4 1513875542 1513875868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04798 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 72.857 2.98e-31 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04798 K02943 - csav:115697224 97.0561