Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04793 ATGATGCAACCCGGCGGACCTGGCATGGCTCCACCCACCATCCCCCAACAACACCAACAATACCAACAACACCACCAACAACAACAACCCTACATGATGATGCCTCCACAGCCTCAGCCTCAAACCCAGCCTCCTCAGATGTGGGCCCCGTCTCCTCAGGCTCTTCCACAATCTGCGCCGCAACAGCAACAGCCTCAGCCGGCTAGTGCTGATGAGGTTCGTACTCTCTGGATCGGTGATTTGCAGTACTGGATGGATGAGAATTATCTCTATCAATGTTTCTCACATACCGGCGAGGTTGGATCTGTTAAAGTTATTCGCAATAAGCAGACTAATCAATCTGAAGGTTATGGATTTCTTGAGTTTACTAGCCGTTCTGGTGCTGAGAGAGTACTTCAATCATTTAATGGCACCATTATGCCAAATGGTGGGCAGAACTTCAGATTGAACTGGGCGACTTTTAGTTCTGGTGAGAAGCGTCATGATGATTCTCCTGATCACACCATATTTGTTGGGGACTTGGCCGCTGATGTTACTGATTATCATCTGACGGAAGTATTTAGAACTCGGTATAACTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGTAGGACAAAAGGTTATGGTTTTGTCAGGTTTGCAGATGAGAGTGAACAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCAATGCGTATTGGACCAGCTTCTAACAAAAACCTTAACACACAGACGTCAAAAGCTTCATATCAGAGTCCTCAAGGAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCTCAGACGATCATTTGAAACAAGTCTTTGGGCAATATGGAGAACTTGTTCATGTGAAGATTCCGTCTGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTCTGCAGAAGAGGCACTGCGGGTTTTAAATGGTACACTTCTAGGTGGACAAAATGTTCGACTTTCATGGGGCCGAAGCCCAGCCAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTAGTAGTGGATACTATGGATATCCCCAGGGTTATGAAAATTATGCTTACGCCGCCCCTGCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCTGCAGGGTATGCTAACTACCAACCTCCCCAGCAGCAACAGCAATTAGGATATAGCTAA 1236 0.462 MMQPGGPGMAPPTIPQQHQQYQQHHQQQQPYMMMPPQPQPQTQPPQMWAPSPQALPQSAPQQQQPQPASADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFTSRSGAERVLQSFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDHTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLNTQTSKASYQSPQGGAQNENDPNNTTIFVGNLDPNVSDDHLKQVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYYGYPQGYENYAYAAPAAGQDPNMYGSYPAGYANYQPPQQQQQLGYS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04793 411 Gene3D - 249 355 IPR012677 -
Vifa4g04793 411 MobiDBLite consensus disorder prediction 52 70 - -
Vifa4g04793 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 346 IPR000504 GO:0003723
Vifa4g04793 411 Gene3D - 73 153 IPR012677 -
Vifa4g04793 411 MobiDBLite consensus disorder prediction 13 32 - -
Vifa4g04793 411 SUPERFAMILY RNA-binding domain, RBD 37 155 IPR035979 GO:0003676
Vifa4g04793 411 SUPERFAMILY RNA-binding domain, RBD 162 265 IPR035979 GO:0003676
Vifa4g04793 411 MobiDBLite consensus disorder prediction 33 51 - -
Vifa4g04793 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Vifa4g04793 411 MobiDBLite consensus disorder prediction 1 71 - -
Vifa4g04793 411 SUPERFAMILY RNA-binding domain, RBD 261 371 IPR035979 GO:0003676
Vifa4g04793 411 SMART rrm1_1 75 150 IPR000504 GO:0003723
Vifa4g04793 411 SMART rrm1_1 275 342 IPR000504 GO:0003723
Vifa4g04793 411 SMART rrm1_1 168 242 IPR000504 GO:0003723
Vifa4g04793 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723
Vifa4g04793 411 FunFam Polyadenylate-binding protein RBP45C 159 250 - -
Vifa4g04793 411 MobiDBLite consensus disorder prediction 397 411 - -
Vifa4g04793 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 232 IPR000504 GO:0003723
Vifa4g04793 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 339 IPR000504 GO:0003723
Vifa4g04793 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 141 IPR000504 GO:0003723
Vifa4g04793 411 Gene3D - 166 242 IPR012677 -
Vifa4g04793 411 MobiDBLite consensus disorder prediction 390 411 - -
Vifa4g04793 411 FunFam Polyadenylate-binding protein RBP45 10 158 - -
Vifa4g04793 411 CDD RRM1_SECp43_like 75 155 - -
Vifa4g04793 411 CDD RRM2_SECp43_like 166 245 - -
Vifa4g04793 411 FunFam Polyadenylate-binding protein RBP45C 251 356 - -
Vifa4g04793 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 350 - -
Vifa4g04793 411 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04793 Vifa-Chr4 1512440085 1512444146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04793 168 339 Eukaryotic Initiation Factors Gene Family AT4G34110 31.638 3.78e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04793 - - gmx:100796848 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04793 4 1512440085 1512444146 Vifa1g09965 1 1634922822 1634925941 PCT