Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g04791 | ATGGAAGAAGGTAACGCAGATCTTCCTTGTCCATCACCCTCACCCTCACCCTCTCCCTTCCGATCTTCTTCACTCCTCAAAGATATTTCAAACTTCAAAACCCCTTTCAAAACCCCCAAACGCTCCTCTTTCTCTCTCGATACGCAATCTCCCTCAACTCAATACTTCACCGCTCCCAAATCCAAACACACCACAGTCATGCGTCGCCCTAACAAATCCTCAGCAGCAGCTTCCAGAAAACTCAAAGCAATTCAAATCGAACAGTCCCACTCTTCTCGAAACGCGCAGAGAAGAAAAGAACAATCGCTCAAATCCCTAGCCAAATCCCTAACCGTTTGGCTCAATTTCCTTCTCGAATCCCCTGCTTCATGCGGTTGCGATCTTTCAATTGCTGGTGTTCAGATCTCCGATGCTTCTCCGGCGACCAAGGGGAAACGTGATAATGTATCGAGGAATTCGGTTGGAGTTGATTCGTCATGGCGAACTCCCAAACGCCAGAGGAAGACTGCGGCATCTTCCTTGTCGCGAGTTGGTAAGGAAATTGTGCCTGATGCGGATTCGCAGAATTCTTTGTTTTCGCGATTAAAGGATTCTCTGAAGGATGTATGTAGTTTTGACGATTTCAAGCAGCGAATGAGTGTTTATTTGAGTCTCGGAACTTGTGAAGATATCTTCCATGTCATGAATCAAGTTACCAAGACAATTGATGAAGGAAGGCTAAATATGAAGGCACATTGCCCAATAGTAACAGATTTAGGGTTGAAGGATAAGGCAGTAAAAGTCCTTATGTGTTATAATCCGAGTTGGCTGCGAATGGGACTGTATATAATTTTTGGTGGGGATTCTTTAGTGTCTAATGGGGATGGAGAGTCTGATCAAGATGCTATATTTCTAAAAATGGTCATTGACAAACTATTTTTTACACACGAGGGTTTAGCAAAAGCTTATGCTTATAACAAGATGGTTGAAGGAGTTTATAGGTCTGGATACTATGAGAATTTGGGGAATGTGATTTTGAAGAGAATATTGTTGCTTGTGCTTATCTTAGATAAAGCTAAATGTCAATGTTGCCTCCCTATTGAGTATGGTATTGATGGATTGGATGGTGGTTCACCTTTACTATTCAAAGCAGAGTTTTGGATTAAATCAAGTAGTCAAGTGATTCAGGAATTTCTGTCCTCTGATGTAATGCGCGGAGAAGGCAATCTTCTGACACATTTGATTATTTTAGGTTACAAAGTGTCTCACCAACAGGGGCCTCTTGTTGAGTATGATTTCCGGGTCAGAGATTTATTCATAGATCTTCAAGATGGACTAAAACTATGTAGAGCTATTCATCTCTTGCAAAACAATTCTTCTATACTCAAGAAAATTGTAGTTCCTTCTGACACCCGTAAGAAAAATTTGGTAAACTGTGGTGTTGCCCTACAATATCTTAGACTAGCTGGGGTCTCATTACTTGATGAAGACGACATAATGATTGCAACAGAAGATATTATTAATGGAGATAAAGAACTCACAATTTCTTTGCTCTGGAATATATTTGTTCGTTTGCAGCTGCCTTTGCTGGTCGACAAAACAAGTTTAGTTGGGGAAATTTCTAAAATCCGCGGACTTGGCACGGATCTCGCAAGCGATGCAAATTCTAGTTCTTTGGAATTGCTTTTGAAATGGATTCAGGCTGTTTGTGACAATTATAAGTGCACAGTTGACAATTTCCATTCCCTTGTTGATGGCAAAGCAATCTGGTGTTTACTTGATTATTACTTCCAGAAGGAACTTCACAATGTCTGTTCATTGAAGGAAGTTTATGAAAAAGGTGGCAAGATGTCAATCATGTCAGTTAATGAATATTCAGATGCACTGTACAATTTCATATTATCCCAGAAATTGACCACGTTGCTGGGGAATTTTCCTGAGGTACTACAGATTAGTGATCTACTTCAGCATAATGGCGCTTGCAGTGATCGAAGTGTGGTGATATTGGTTGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAAAATGGAACACTTAAATTTTCATAAGCTATTGGGTTATGACTGCGAGAACAAAAATCGTAGAAATTTGAGGACTGTACTATGCCATTTCAGTTCTGAATCAGCTCAAAAGCTTTATGCTTCGGATGCGCGTGATGATGAAGATGCCGCAAGAAAATTCAAGGCCATCCAGACTTGGTGGCAAGATATGGCTGATCAAAACAATATTATGAAGCCAGTTGTCTCTATTTTGAAGACATCTAGGGCCACCGAAAGCAACATTGTTGTTAGAAGAGAAGATGCTGCAAGAAAAATACAAGCACATATCAAAGGACTGGTTGTACGGCGCACGTTTCTCAAGATGGTAGATGCTGTTATCCTTTTGCAGACTGTTTTCCGAGCTAGGAAGAAAGTAAGGCAGGAGCCGGTTTGCATGATATTCACTGCTGGTCCAATCTGTGATATCTCATGTGAAACATTGAAGCAATCAGAAGTATATGAGAGGTGGTTAATGAGAAAAGAATTTTTAAATCAGATTCATGCTGTCATAAGAATTCAATCATATTTTCGAATGTGGAGATGTCTGAATGCTATTCAGAACTTCAAAGCCTTGTTTAAGGCTGCTATTGTCGTTCAATCTTCTTTTCGTGGATGGATTGCTCGGAAGCATGCTTGTGCTCGTAGGAATCAGATTGTTGAGATTCAAAGGCATTGCCGCGGTTGGCTTGTGAAACGAGATTTTGTGCTTCAAAGAGATGCTATAATAAAAATCCAGAGTATCAGTAGAAGTTTGATCTGTCAGAAGACACTCAATTGTCAGAAAGATGCTGCATTGGAGATCCAGCGCTCCATCAGGGGGCATTTAACTCGAAATCGGCTATTAGGTAGTGCTTCCAAGTCACGTGCAGCTATTACTGGTAGTTGCATTTCAAGACCTGTTGGCTTTCGTAGTTTTCAACTTGAAGCACTCATGTGTGCAGTAGTGAAATTGCAAAGGTGGTGGAAGGGTCTCTTGTTGCTTAAACTAATGAATAGATCAGCCGTCACAATCCAGAGTATCAGTAGAAGTTTGATCTGTCAGAAGACACTCAATTGTCAGAAAGATGCTGCATTGGAGATCCAGCGCTCCATCAGGGGGCATTTAACTCGAAATCGGCTATTAGGTAGTGCTTCCAAGTCACGTGCAGCTATTACTGGTAGTTGCATTTCAAGACCTGTTGGCTTTCGTAGTTTTCAACTTGAAGCACTCATGTGTGCAGTAGTGAAATTGCAAAGGTGGTGGAAGGGTCTCTTGTTGCTTAAACTAATGAATAGATCAGCCGTCACAATCCAGTCTTGTACACGTGGATGGATAGCCAGACGAAAGGCCACAGTTGAGAAACACCATACTAATGTCATGGAAGAAAATGCCACATTGGAGATCCAACGCTATATTAGGGGACATTTAACTCGAAATTTGATATTAGGCAGTGCTTCTAAGCCGCGTGTAGTTGCTGCTGGATGCATTTCAAAACCAACTGGCTGTTCTAGTTTTCAGTTGAAACTATTCTTGTTTCAAGTAGTGAAATTGCAACGATGGTGGAAGCATCTCTTGTCACATAAATTGAGGACAAGGTCTGTAACCATTATACAGGCTCAAATTCGCGGGTGGGTAGCAAGGCAAAGGGCCAATGCTTATAGACATCAAATTATTGTCATACAGTCTCAAATTCGTGGATGGATAGCCAAGCGAAGGGCTAACTTTTATAGGCATAATATTATTATCATACAGTCTCAAATTCGTGGATGGATAGCGAGGCGAAGGGCTACCTTTTATAGGCATGATATTATTATCATACAGTCCCACTGGAAAGGTTACATTGCTCGTAAGCAGTCAACAAAACAGCTAATGGATTTGCGCTCGAGACTGCAAGAGTCTTCCAAAAATGTGGATGATAGCAAACGGCTCATAAACAGACTCTTGGCAGCGCTTTCAAAGCTACTAAATATGACGAGTCTCAGTGACATCCTTCATACTTGTTCAACATTGAATTTGGCGACATGCCATTCTCAAAGATGCTGTGAAGAACTTGTGGCTGCTGGGGCCATTGAGACCTTGCTGCAGCTTATTGGATCACTCAGCCGGAGTATTCCTGATCAAGAGGTTTTAAAGCATGTTTTATCAACTCTCCGAAATCTTGCTCGCTATCCTCATCTACTGGAAGTGTTGATACAAACACATCGATCTATACAAACAATCGTTTTGGAGTTAACAAGGAATAATGAGGAGAGCTTCTTCATTGCTTCTGGGCTTTTGAAGGAAATATGCTCAACTCACCAAGGCGTCAACACCATAATTAATTCCCCTGCCTTACTAAGGAGACTGCGTAGTCTTGTTGAGAAGCTTGCTAGGAAGGTCACTTATAACCCAAAAAGTAATCTTCGGGGTCCTACTCCTAGTACAGTTGTTACTGCTAAAGAAAACACAGATAGAAGATTGAAGGAGGCTACCGAGATTCTTAAGCTTTTAACACACCGTTGA | 4521 | 0.4114 | MEEGNADLPCPSPSPSPSPFRSSSLLKDISNFKTPFKTPKRSSFSLDTQSPSTQYFTAPKSKHTTVMRRPNKSSAAASRKLKAIQIEQSHSSRNAQRRKEQSLKSLAKSLTVWLNFLLESPASCGCDLSIAGVQISDASPATKGKRDNVSRNSVGVDSSWRTPKRQRKTAASSLSRVGKEIVPDADSQNSLFSRLKDSLKDVCSFDDFKQRMSVYLSLGTCEDIFHVMNQVTKTIDEGRLNMKAHCPIVTDLGLKDKAVKVLMCYNPSWLRMGLYIIFGGDSLVSNGDGESDQDAIFLKMVIDKLFFTHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLILDKAKCQCCLPIEYGIDGLDGGSPLLFKAEFWIKSSSQVIQEFLSSDVMRGEGNLLTHLIILGYKVSHQQGPLVEYDFRVRDLFIDLQDGLKLCRAIHLLQNNSSILKKIVVPSDTRKKNLVNCGVALQYLRLAGVSLLDEDDIMIATEDIINGDKELTISLLWNIFVRLQLPLLVDKTSLVGEISKIRGLGTDLASDANSSSLELLLKWIQAVCDNYKCTVDNFHSLVDGKAIWCLLDYYFQKELHNVCSLKEVYEKGGKMSIMSVNEYSDALYNFILSQKLTTLLGNFPEVLQISDLLQHNGACSDRSVVILVVFLASQLFVKKKMEHLNFHKLLGYDCENKNRRNLRTVLCHFSSESAQKLYASDARDDEDAARKFKAIQTWWQDMADQNNIMKPVVSILKTSRATESNIVVRREDAARKIQAHIKGLVVRRTFLKMVDAVILLQTVFRARKKVRQEPVCMIFTAGPICDISCETLKQSEVYERWLMRKEFLNQIHAVIRIQSYFRMWRCLNAIQNFKALFKAAIVVQSSFRGWIARKHACARRNQIVEIQRHCRGWLVKRDFVLQRDAIIKIQSISRSLICQKTLNCQKDAALEIQRSIRGHLTRNRLLGSASKSRAAITGSCISRPVGFRSFQLEALMCAVVKLQRWWKGLLLLKLMNRSAVTIQSISRSLICQKTLNCQKDAALEIQRSIRGHLTRNRLLGSASKSRAAITGSCISRPVGFRSFQLEALMCAVVKLQRWWKGLLLLKLMNRSAVTIQSCTRGWIARRKATVEKHHTNVMEENATLEIQRYIRGHLTRNLILGSASKPRVVAAGCISKPTGCSSFQLKLFLFQVVKLQRWWKHLLSHKLRTRSVTIIQAQIRGWVARQRANAYRHQIIVIQSQIRGWIAKRRANFYRHNIIIIQSQIRGWIARRRATFYRHDIIIIQSHWKGYIARKQSTKQLMDLRSRLQESSKNVDDSKRLINRLLAALSKLLNMTSLSDILHTCSTLNLATCHSQRCCEELVAAGAIETLLQLIGSLSRSIPDQEVLKHVLSTLRNLARYPHLLEVLIQTHRSIQTIVLELTRNNEESFFIASGLLKEICSTHQGVNTIINSPALLRRLRSLVEKLARKVTYNPKSNLRGPTPSTVVTAKENTDRRLKEATEILKLLTHR | 1506 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g04791 | 1506 | Gene3D | - | 546 | 671 | IPR036872 | - | |
| Vifa4g04791 | 1506 | SUPERFAMILY | Calponin-homology domain, CH-domain | 341 | 591 | IPR036872 | - | |
| Vifa4g04791 | 1506 | SMART | ch_5 | 399 | 517 | IPR001715 | GO:0005515 | |
| Vifa4g04791 | 1506 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 765 | 792 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1272 | 1301 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SUPERFAMILY | ARM repeat | 1309 | 1461 | IPR016024 | - | |
| Vifa4g04791 | 1506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1179 | 1296 | IPR027417 | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 1297 | 1481 | IPR011989 | - | |
| Vifa4g04791 | 1506 | PANTHER | UNCHARACTERIZED | 54 | 1008 | - | - | |
| Vifa4g04791 | 1506 | SMART | arm_5 | 1350 | 1395 | IPR000225 | GO:0005515 | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1033 | 1062 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | CDD | CH_ASPM_rpt1 | 403 | 514 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1226 | 1253 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | MobiDBLite | consensus disorder prediction | 141 | 172 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1249 | 1276 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Coils | Coil | 1289 | 1316 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 1361 | 1394 | IPR000225 | GO:0005515 | |
| Vifa4g04791 | 1506 | MobiDBLite | consensus disorder prediction | 139 | 172 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 873 | 900 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Gene3D | - | 1103 | 1154 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | Calponin homology (CH) domain profile. | 397 | 519 | IPR001715 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 764 | 786 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1202 | 1224 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 787 | 806 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1032 | 1054 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1273 | 1293 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 870 | 892 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1250 | 1270 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1009 | 1031 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 844 | 866 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 893 | 915 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 916 | 938 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 939 | 961 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1102 | 1124 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1225 | 1247 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | SMART | iq_5 | 1133 | 1155 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 898 | 914 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1276 | 1291 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1204 | 1222 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 847 | 861 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1105 | 1122 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1137 | 1152 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 767 | 785 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 942 | 960 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1251 | 1268 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1035 | 1053 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 1230 | 1245 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | IQ calmodulin-binding motif | 873 | 890 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | Armadillo/beta-catenin-like repeat | 1351 | 1395 | IPR000225 | GO:0005515 | |
| Vifa4g04791 | 1506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 831 | 914 | IPR027417 | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 1199 | 1250 | - | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 1008 | 1065 | - | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 918 | 972 | - | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 764 | 809 | - | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 869 | 917 | - | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 1251 | 1296 | - | - | |
| Vifa4g04791 | 1506 | Gene3D | - | 414 | 519 | IPR036872 | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1203 | 1230 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 940 | 969 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | MobiDBLite | consensus disorder prediction | 19 | 61 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1103 | 1131 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Pfam | Calponin homology (CH) domain | 427 | 516 | IPR001715 | GO:0005515 | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 1134 | 1162 | IPR000048 | GO:0005515 | |
| Vifa4g04791 | 1506 | Coils | Coil | 1486 | 1506 | - | - | |
| Vifa4g04791 | 1506 | ProSiteProfiles | IQ motif profile. | 894 | 923 | IPR000048 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g04791 | 869 | 1039 | Myosins gene family | AT5G43900 | 25.568 | 8.64e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g04791 | K16743 | - | qsu:112015851 | 1323.15 |