Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04788 ATGGAGTCAAATGCCCCTGACAGAGTTTACGCGCTTCACGTTGAAGCACAACCGAAGCCCAGCCCTCTCCTTAAAATGATAGCAGTCGCCTCCATCGCCGCCGGTATACAATTCGGCTGGGCTCTCCAGCTCTCTTTACTCACACCATACATCCAGCTCCTCGGAGTACCTCACAAGTGGTCAGCCAATATCTGGCTCTGCGGTCCCATCTCCGGGCTAATTGTCCAGCCCATTGTCGGATACTACAGCGACAGGAGCCGTTCTCGCTTCGGTCGCCGTCGTCCCTTCATCTTCTTCGGAGCATTATCCGTTGCCATCTCCGTCTTCCTCATCGGCTACGCGGCCGATATCGGCCGCTCTTTAGGCGATAACATAACGAAGAAAACACGTCCACGTGCTGTTGTTATCTTTGTGCTAGGGTTTTGGGTACTCGACGTGGCTAATAACATGCTTCAAGGACCTTGCCGTGCTTTTCTCGGTGACCTAGCTAAGGGTGATCACCGGAGAATGAGAACCGGTAACGCGTTCTTCTCGTTCTTCATGGCCGTTGGTAACGTTCTAGGTTATGCTGCTGGCTCTTATGGTAAACTCTATAAGATTTTTCCGTTCTCCGAAACCAAAGCTTGTGACGTATTTTGTGCAAATCTCAAAACATGTTTCTTCTTCTCAATCATTCTCCTCGCCGGAGTTTCTGCCTTTGCTTTACTCTACGTAGAAGACACTCCAATCGAATCAAAGCAAACAAAATCTCAATCAGAGCCTGAAGATGATAAAACAGATTCATGCTTCGGTGAATTACTAGGTGCTTTCAATGGACTTGAAAAAAAGATGTGGATGTTAATGTTGGTAACCTTTATAAACTGGATAGCATGGTTTCCTTTCTTCTTGTTCAACACTGATTGGATGGGACATGAAGTGTACGGTGGCGCCACCGGTGAAAAAAATTATGACGCCGGTGTTCGTGCTGGTGCTTTGGGACTCATGGTTAATGCGGTTGTGCTTGCGGGCATGTCTTTGGCGGTTGAACCATTGAGCCGTTTAGTTGGTGGAGCCAAGAGATTATGGGGAATCGTTAATATTATTCTCGCTTTTGCGCTGGTTATGACGGTTGTTATTACCAAAGCAGCGGAGCATGAACGCCGTGCCACTGGTGGAGGGACGCCGTCTAACGGTATTAAAGCTGCCGCATTAGTTTTCTACGCCGTCCTTGGAATCCCTATGGCGATTAATTTCAGTGTACCATTTGCTTTAGCATCTATTTACTCTACCTCAACAGGAGCAGGGCAAGGTTTATCTTTAGGAGTCCTCAATATTTCAATTGTTGTGCCACAGATGATAGTAGCACCATTGAGTGGACCCTGGGATTCCTTGTTTGGTGGTAGCAACTTACCTTCATTTATCGTGGGTGCTGTGGCGGCAGTCATCAGTAGTATTTTGGCAATTGTTCTTTTACCGACTCCAAAGCCAGCCGATATTGTCAAAGCTTCAACTGCCACCCCCGGTGGTTTTCATTAA 1515 0.4746 MESNAPDRVYALHVEAQPKPSPLLKMIAVASIAAGIQFGWALQLSLLTPYIQLLGVPHKWSANIWLCGPISGLIVQPIVGYYSDRSRSRFGRRRPFIFFGALSVAISVFLIGYAADIGRSLGDNITKKTRPRAVVIFVLGFWVLDVANNMLQGPCRAFLGDLAKGDHRRMRTGNAFFSFFMAVGNVLGYAAGSYGKLYKIFPFSETKACDVFCANLKTCFFFSIILLAGVSAFALLYVEDTPIESKQTKSQSEPEDDKTDSCFGELLGAFNGLEKKMWMLMLVTFINWIAWFPFFLFNTDWMGHEVYGGATGEKNYDAGVRAGALGLMVNAVVLAGMSLAVEPLSRLVGGAKRLWGIVNIILAFALVMTVVITKAAEHERRATGGGTPSNGIKAAALVFYAVLGIPMAINFSVPFALASIYSTSTGAGQGLSLGVLNISIVVPQMIVAPLSGPWDSLFGGSNLPSFIVGAVAAVISSILAIVLLPTPKPADIVKASTATPGGFH 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04788 504 CDD MFS_SLC45_SUC 26 481 - -
Vifa4g04788 504 SUPERFAMILY MFS general substrate transporter 26 489 IPR036259 -
Vifa4g04788 504 Gene3D MFS general substrate transporter like domains 24 251 IPR036259 -
Vifa4g04788 504 Gene3D MFS general substrate transporter like domains 274 492 IPR036259 -
Vifa4g04788 504 PANTHER SUGAR TRANSPORTER 22 483 - -
Vifa4g04788 504 NCBIfam sucrose/proton symporter 22 488 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vifa4g04788 504 Pfam MFS/sugar transport protein 29 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04788 Vifa-Chr4 1510586700 1510589231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04788 3 504 Sucrose Transporter Gene Family AT1G71890 60.735 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04788 K15378 - gmx:100785359 687.182