Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04772 ATGAAGTCTCTTGCAACAACCTCTTTCTTATGTGCTCTACTTCTGTTTGGAGTGTTATTACCTTTCTCCTCAAATGCACAACTTGATCCATCCTTTTACAACAACACTTGTCCAAACGTTAGTTCCATTGTTCGTGATGTCATAAGAAATGTTTCCAAAACAGATACTCGTATGCTTGCTAGTCTCGTCAGGCTTCACTTCCATGAATGCTTTGTTCAAGGTTGTGATGCATCAGTTTTGTTGAACACAACGGATACCATTGTGACTGAACAAGATGCTTTTCCAAATATCAACTCTTTGAGAGGTTTAGATGTTGTCAACAAAATCAAAACAGCTGTAGAAAGTGTTTGTCCTAACACTGTTTCTTGTGCTGATATTCTTGCACTTGCAGCTGAATTATCATCTACACTGTCTCAAGGTCCTGATTGGAAAGTTCCATTAGGAAGAAGAGGAAGTTTAACAGCAAACCAAACACTTGCTAATCAAAATCTTCCAGCTCCATTCAACTCATTAGACCAACTTAAAGCTGCATTTGCCAAACAAGGCCTTAATACTACTGATCTAGTTGCTCTCTCTGGTGCTCATACATTTGGAAAAGCTCATTGCTCTTTATTCGTTAGTCAATTGTACAACTTCTGCAACACAAACAATCTTCATCCGATTCACCTCACAACAACAAACCAGTTTCTATCGTTCCGTTCTGTCTTCCGGCTTCCGCTTACCAACCTCCTCACCATCAGCAACGCATAA 750 0.396 MKSLATTSFLCALLLFGVLLPFSSNAQLDPSFYNNTCPNVSSIVRDVIRNVSKTDTRMLASLVRLHFHECFVQGCDASVLLNTTDTIVTEQDAFPNINSLRGLDVVNKIKTAVESVCPNTVSCADILALAAELSSTLSQGPDWKVPLGRRGSLTANQTLANQNLPAPFNSLDQLKAAFAKQGLNTTDLVALSGAHTFGKAHCSLFVSQLYNFCNTNNLHPIHLTTTNQFLSFRSVFRLPLTNLLTISNA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04772 249 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vifa4g04772 249 CDD secretory_peroxidase 27 217 IPR033905 GO:0004601|GO:0042744
Vifa4g04772 249 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 SUPERFAMILY Heme-dependent peroxidases 27 228 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 ProSiteProfiles Plant heme peroxidase family profile. 27 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 Gene3D - 32 164 - -
Vifa4g04772 249 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 Pfam Peroxidase 44 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 Gene3D Peroxidase, domain 2 165 221 - -
Vifa4g04772 249 PANTHER PEROXIDASE 72-RELATED 25 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g04772 249 FunFam Peroxidase 31 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04772 Vifa-Chr4 1505420395 1505421144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04772 3 230 Peroxidase AT3G32980 54.545 7.22e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04772 K00430 - gmx:112997600 316.62