Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04770 ATGGACACTCACACTCTCTCACTCTCACGTCTTCTTCCTCTTCGTGTTCTTTCATCCCAAAACCCTAATTCTTCTTCTTCTTCTTCTTTCTCTCGCTTCCCTCGTTCACACAACAACCACCATTTTCTGAAATTATTCTCCTCCACTCACATTAACCGCTTCTCCTTCTTCGCCACAACTCCACTAGCCATTGCAAATCCTTCTCCCACCATCCCTACAACGGATGATTCCATAACCAATCCCACTCTCGGAGATTTATGCCAACCTCATGTACCTGATCAATTACTGCAAAGAATGGAAGAGGTTGGATATGTCATGCCTACTGAGGTCCAGAAGCAAGCATTGCCGCATCTTTTTTCTGGCCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTAGCATACTTGCTTTTGATATATTCCATCATCAACACTAAAAAATCTTCCATGCAAGCACTAATTTTGGTGCCCACCCGTGAGCTTGGCATGCAAGTTGCCAAAGTTGCTAGGATACTGGCGGCAAAGCCAACCGGAGTTGAAGGGGAGCAGAAATCATGTACCATCATGGCTCTGTTGGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGTCAAATGCTAGAAAAACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATATTCAATTCTTCAAAGCAAGCGAGTTCTCTCCGGAAGATTTTGACCTATTCATCCTGCAATAACCGTCAGACAGTGTTTGCCAGTGCATCTATACCACAGCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAATCCAGTGGAGCCCATGCCATCTCGCCTATATCACAGATTTATAGTATGTGATAAGAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTGGCATTATATTTGTTAGTGAGCAGTCTGAGAAGTCGAAAAAGACTGGAAATGCTCCATCCACATCCCTTGTGATTGACTTTCTAAAGACATCATATCATGGTTCTTTAAATATCCTCCTTCTCGAAGATGACATGAATTTCAATTCAAGAGCAGCTTCTCTGTTGGAGGTCAAGAAAGGTGGCGGCTATCTTCTAGTGGCAACAGATGTAGCTGCTAGAGGAGTTGACTTTCCAGAAATGAGTCACATATACAACTTTGATCTACCAAAAAATGCCATTGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGATGTTAACTGTTCTGTCACAAGCATTATAATCTCTGAGGAGCAGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTGAAGAGCTTATTCCATAA 1449 0.4279 MDTHTLSLSRLLPLRVLSSQNPNSSSSSSFSRFPRSHNNHHFLKLFSSTHINRFSFFATTPLAIANPSPTIPTTDDSITNPTLGDLCQPHVPDQLLQRMEEVGYVMPTEVQKQALPHLFSGRDCILHAQTGSGKTLAYLLLIYSIINTKKSSMQALILVPTRELGMQVAKVARILAAKPTGVEGEQKSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLEKQLFSLGTLRVLVVDEVDFIFNSSKQASSLRKILTYSSCNNRQTVFASASIPQHNRFLNEAVQQKWTKRDVIHIHVNPVEPMPSRLYHRFIVCDKKRKLQTLLSLIQSDAPESGIIFVSEQSEKSKKTGNAPSTSLVIDFLKTSYHGSLNILLLEDDMNFNSRAASLLEVKKGGGYLLVATDVAARGVDFPEMSHIYNFDLPKNAIDYLHRAGRTCRKPFSDVNCSVTSIIISEEQFVLQRYENELRFVCEELIP 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04770 482 Pfam DEAD/DEAH box helicase 108 280 IPR011545 GO:0003676|GO:0005524
Vifa4g04770 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 448 IPR027417 -
Vifa4g04770 482 SMART helicmild6 362 446 IPR001650 -
Vifa4g04770 482 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 482 IPR001650 -
Vifa4g04770 482 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 474 - -
Vifa4g04770 482 Gene3D - 310 479 IPR027417 -
Vifa4g04770 482 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 296 IPR014001 -
Vifa4g04770 482 CDD SF2_C_DEAD 315 444 - -
Vifa4g04770 482 CDD DEADc 95 289 - -
Vifa4g04770 482 Gene3D - 68 296 IPR027417 -
Vifa4g04770 482 Pfam Helicase conserved C-terminal domain 325 444 IPR001650 -
Vifa4g04770 482 SMART ultradead3 103 317 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04770 Vifa-Chr4 1503651341 1503657965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04770 92 480 Eukaryotic Initiation Factors Gene Family AT1G72730 27.020 5.97e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04770 - - psat:127138392 832.017