Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04759 ATGGCTACCGACAATGGTTTGGTCTATGAAGATGTTCTTGGTCTTTTTCCTGTCGGAATGCATGTTCTTGCCGTTGATGATAATCATGTTTGTCTGAATATGTTGGAGACTATGCTTCTGAAATGCCACTATAAAGTTACTACGACTACGGAGTCGGTGAAAGCATTGGAAATGTTGCGGAAAAATAAAGATATGTTTGATTTGGTTATTTGTGACGTTAACATGCCGGAGATGGATGGTTTCAAGCTTCTGAAGCAAGTTGGAGAACTTGGGAGGGATCTACCTTTTATCATGTTGTCGGGGCACGGTGATACCGAAAGCGTGATGAAAGGTGTGATGAACGGTGCGAGTGATTATATATTGAAACCGATACGAATGGAAGAGGTGAAGACGATTTGGCAACATGTTGTGAGAAAGAAGATTGATGGAAAATATCAGAAAAAGGTTTCTGCTGCTAATAATGAAGATCAGAAAAAGGTTTCTGGTGACAATAATGAGGAGAAAATCGGCAATGTTGCTAGGGTTTGTAGTCCTTATACTACATCTCATCAAAATGCTGCTGTCAATGATCAAATTCTAGGGCAAAAAAGAAAAGAACGAAGCGATTCAGAAGAAGATAATGATACAGACGATTCTACCGAGAAGAAGCCTCGTTTCGTTTGGGATACTGAGTTGCATAATAAATTTGTTGTTGCAGTGAATCAACTTGGTTTTGACAAGGCTTATCCTAAGAAAATCCTCGAGTTGATGAATGTCCAAGGGCTTACAAGAGAGAATGTAGCTAGTCATTTGCAGAAATTCAGATTGAGCCTCAAAAGATCAGATAAACAGCCTAGAACTGATGCTATATTTGATTCTACTAGCCCTTATCTGCCAATGGGTTCAGTAGGCGGAAGAAGGTTCATAAACAGCACATTACCATCATATGGATCCGGTCAATTAGTTTGTCCGCTAAACACTCCATCAGCATTGAACTTCAGAAGGACTAGTTATGCATCATTGCCTCCGTTTCAGTCACGGAACAACACTAACAGTTTCCAAATGCCAATGGTTTCTGCAAATGAATCAGTGCCTCCGTTTCAGTCACGGAACAACACTAACAGTTTCCAAATGCCAATGTTTTCTGCAAATGAATCAGTGCCTCCGTTTCAGTCACGGAACAACACTAACGGTTTCCAAATGCCAATGGTTTCTGCAAATGAATCAGTGCCTCCGTTTCAGTCACAGAACAACACTAACGGTTTCCAAATGCCAATGGTTTCTGCAAATGAAATGTCCTGTTTCTTACCGGACTTTCGAACATCAATAGGGACAAATCAATTTCAGCAAAATGATTATCGAACTGGTTATACGAAGTTAAGCTCAATTCAGGATCCAAAGGCTTTTACACCTTCTTCAAGCTACCAAGGCTTTAAAGCTGCAGCTAATAATAATGCAAATAGCAGTTTCGTTTCTTGCATCCCAAGCATTCATCATCCATTAACACATAACGTAAATAGCAGTTCCTTTTCTTGCATCCCAAGCAATCAACCATTGACACATAATTTAGAACCACTTACAAAAGATTCTTTAGTTGGAAGTGCAGTTTTGAAAACACAATCTTCTAACAACATTTTCGATTCGGTTGTTGCAAAAACACAATCTCCGAACAATACTTTGGATTCGGTTGGAGTTGCAGATGTGAAAAGAGGATCACAATCTATGATCAATCCTTTGGGTTCAGTGAAAACACAGTCTTTGGATTCTGCGGTGTCTCTAGCCAAATCTGATACTCAACTAATCACCCAGATGCCAGAAACCGAGAAATTCTATACAGATCCAGAAGCTATGAATTCAAATGATGATTGCTTCTATAATCAAATGTTGTCTCTACAACCAGGATTCTTCGATAATGGTTGCGTGTCGTTGAACGACATATATTTAAGTTAA 1929 0.3935 MATDNGLVYEDVLGLFPVGMHVLAVDDNHVCLNMLETMLLKCHYKVTTTTESVKALEMLRKNKDMFDLVICDVNMPEMDGFKLLKQVGELGRDLPFIMLSGHGDTESVMKGVMNGASDYILKPIRMEEVKTIWQHVVRKKIDGKYQKKVSAANNEDQKKVSGDNNEEKIGNVARVCSPYTTSHQNAAVNDQILGQKRKERSDSEEDNDTDDSTEKKPRFVWDTELHNKFVVAVNQLGFDKAYPKKILELMNVQGLTRENVASHLQKFRLSLKRSDKQPRTDAIFDSTSPYLPMGSVGGRRFINSTLPSYGSGQLVCPLNTPSALNFRRTSYASLPPFQSRNNTNSFQMPMVSANESVPPFQSRNNTNSFQMPMFSANESVPPFQSRNNTNGFQMPMVSANESVPPFQSQNNTNGFQMPMVSANEMSCFLPDFRTSIGTNQFQQNDYRTGYTKLSSIQDPKAFTPSSSYQGFKAAANNNANSSFVSCIPSIHHPLTHNVNSSSFSCIPSNQPLTHNLEPLTKDSLVGSAVLKTQSSNNIFDSVVAKTQSPNNTLDSVGVADVKRGSQSMINPLGSVKTQSLDSAVSLAKSDTQLITQMPETEKFYTDPEAMNSNDDCFYNQMLSLQPGFFDNGCVSLNDIYLS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04759 642 SUPERFAMILY CheY-like 19 139 IPR011006 -
Vifa4g04759 642 Gene3D - 20 211 - -
Vifa4g04759 642 ProSiteProfiles Response regulatory domain profile. 21 137 IPR001789 GO:0000160
Vifa4g04759 642 FunFam Two-component response regulator 212 275 - -
Vifa4g04759 642 CDD REC_typeB_ARR-like 22 137 - -
Vifa4g04759 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 272 IPR017930 -
Vifa4g04759 642 SUPERFAMILY Homeodomain-like 214 273 IPR009057 -
Vifa4g04759 642 MobiDBLite consensus disorder prediction 193 215 - -
Vifa4g04759 642 PIRSF RR_ARR_type-B 2 628 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifa4g04759 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 347 IPR045279 GO:0009736
Vifa4g04759 642 MobiDBLite consensus disorder prediction 184 215 - -
Vifa4g04759 642 Pfam Myb-like DNA-binding domain 221 266 IPR001005 -
Vifa4g04759 642 Gene3D - 212 274 - -
Vifa4g04759 642 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 269 IPR006447 GO:0003677
Vifa4g04759 642 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Vifa4g04759 642 SMART REC_2 20 133 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04759 Vifa-Chr4 1501418581 1501420985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04759 11 330 Response Regulator Gene Family AT2G25180 47.522 4.16e-84 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa4g04759 Response_reg 1e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04759 K14491 - psat:127135756 593.193