Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04736 ATGAGTTCTAGGTTATCTGGGAAGGTGAACTGGTTCAATGATATTAAGGGGTTTGGATTCATTACCCCTGATGATGGTACTGAGGAGATTTTCGTTCACCAATCTCAGATCAAGACTGATGGTTTCCGGAGCCTTGCTCCCGGTGAATCTGTTGAGTATCAGGTTGAATATGGTTCCGATGGAAGACCCAAAGCTGTTCAGGTGACTGGACCTGGTGGTGCGGCTGTGCAGGGAAGCGATTATGGTGGTAGTGGACGTGGTTATGGTGGTAGTGAACGTGGAGGAGGACGCAGTGGTGGGGCAGGAGATGCTAATCAGGGGCATGACCCTTAG 333 0.5015 MSSRLSGKVNWFNDIKGFGFITPDDGTEEIFVHQSQIKTDGFRSLAPGESVEYQVEYGSDGRPKAVQVTGPGGAAVQGSDYGGSGRGYGGSERGGGRSGGAGDANQGHDP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04736 110 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Vifa4g04736 110 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Vifa4g04736 110 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Vifa4g04736 110 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 104 - -
Vifa4g04736 110 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Vifa4g04736 110 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Vifa4g04736 110 SMART csp_8 6 71 IPR011129 GO:0003676
Vifa4g04736 110 MobiDBLite consensus disorder prediction 62 110 - -
Vifa4g04736 110 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Vifa4g04736 110 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Vifa4g04736 110 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Vifa4g04736 110 Gene3D - 1 82 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04736 Vifa-Chr4 1498991543 1498991875 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vifa4g04736 CSD 2.5e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04736 - - gmx:100799708 126.331