Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g04734 | ATGTCTATTAGAAAACCCGCATTCCCTCGACTCCTCCTTAACAACGTCTCTTGCATGAGAAATGCCCAACAAATTCTCTCTTATGTGAATGTCTCTCTTCATGATGGAGGGGCACTTGTCCTAACTGGTGCAAACGGTTCAGGAAAGACAACTTTCATGCGCATGCTAGCTGGGTTTTCTCGTCCTTCTGCAGGTGAAATCCTCTGGAATGGCCATGACATTCAAAAATCTTTGATCTTCCAACAGTATAAGCTTCAGCTTAACTGGGTCTCCCTCAAGAAGGCAATTAACGAAAAGTTCACTGTTCTAGAAAATATTCAGTGGTTTGAACTTCTTGAAGGCAAGCAAGGGAAAGCTATGCTTGCACTTGAGGTGATGGGATTAGGAAGATTGGCTAAGGAAAAACCAAGGATGCTTTCAAGTGGCCAGCAGAGAAGATTGCAACTTGCAAGACTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCAGTTGCATTAGATGACGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAGGGAGGAATCGTGATTGTGGCGACTCATTTACCCATTGAGATAGAAGATTCCATGGTCTTGAAGCTGCCACCAAGGTTTCCAAGGGGGATGACATTTGCAGATATGCTTGACCGCATTGATATTAGTTAA | 690 | 0.4391 | MSIRKPAFPRLLLNNVSCMRNAQQILSYVNVSLHDGGALVLTGANGSGKTTFMRMLAGFSRPSAGEILWNGHDIQKSLIFQQYKLQLNWVSLKKAINEKFTVLENIQWFELLEGKQGKAMLALEVMGLGRLAKEKPRMLSSGQQRRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMVLKLPPRFPRGMTFADMLDRIDIS | 229 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g04734 | 229 | NCBIfam | heme ABC exporter ATP-binding protein CcmA | 13 | 209 | IPR005895 | GO:0017004|GO:0022857 | |
Vifa4g04734 | 229 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 11 | 228 | IPR003439 | GO:0005524 | |
Vifa4g04734 | 229 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 200 | IPR027417 | - | |
Vifa4g04734 | 229 | Pfam | ABC transporter | 27 | 166 | IPR003439 | GO:0005524 | |
Vifa4g04734 | 229 | Gene3D | - | 5 | 208 | IPR027417 | - | |
Vifa4g04734 | 229 | SMART | AAA_5 | 35 | 223 | IPR003593 | GO:0016887 | |
Vifa4g04734 | 229 | PANTHER | ABC TRANSPORTER I FAMILY MEMBER 1 | 7 | 222 | IPR005895 | GO:0017004|GO:0022857 | |
Vifa4g04734 | 229 | ProSitePatterns | ABC transporters family signature. | 139 | 153 | IPR017871 | GO:0005524|GO:0016887 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g04734 | Vifa-Chr4 | 1498430023 | 1498430712 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g04734 | 24 | 209 | Calmodulin-binding Proteins | AT2G36910 | 25.000 | 6.96e-09 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g04734 | - | - | tpra:123910081 | 388.652 |