Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04734 ATGTCTATTAGAAAACCCGCATTCCCTCGACTCCTCCTTAACAACGTCTCTTGCATGAGAAATGCCCAACAAATTCTCTCTTATGTGAATGTCTCTCTTCATGATGGAGGGGCACTTGTCCTAACTGGTGCAAACGGTTCAGGAAAGACAACTTTCATGCGCATGCTAGCTGGGTTTTCTCGTCCTTCTGCAGGTGAAATCCTCTGGAATGGCCATGACATTCAAAAATCTTTGATCTTCCAACAGTATAAGCTTCAGCTTAACTGGGTCTCCCTCAAGAAGGCAATTAACGAAAAGTTCACTGTTCTAGAAAATATTCAGTGGTTTGAACTTCTTGAAGGCAAGCAAGGGAAAGCTATGCTTGCACTTGAGGTGATGGGATTAGGAAGATTGGCTAAGGAAAAACCAAGGATGCTTTCAAGTGGCCAGCAGAGAAGATTGCAACTTGCAAGACTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCAGTTGCATTAGATGACGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAGGGAGGAATCGTGATTGTGGCGACTCATTTACCCATTGAGATAGAAGATTCCATGGTCTTGAAGCTGCCACCAAGGTTTCCAAGGGGGATGACATTTGCAGATATGCTTGACCGCATTGATATTAGTTAA 690 0.4391 MSIRKPAFPRLLLNNVSCMRNAQQILSYVNVSLHDGGALVLTGANGSGKTTFMRMLAGFSRPSAGEILWNGHDIQKSLIFQQYKLQLNWVSLKKAINEKFTVLENIQWFELLEGKQGKAMLALEVMGLGRLAKEKPRMLSSGQQRRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMVLKLPPRFPRGMTFADMLDRIDIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04734 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Vifa4g04734 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 228 IPR003439 GO:0005524
Vifa4g04734 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 200 IPR027417 -
Vifa4g04734 229 Pfam ABC transporter 27 166 IPR003439 GO:0005524
Vifa4g04734 229 Gene3D - 5 208 IPR027417 -
Vifa4g04734 229 SMART AAA_5 35 223 IPR003593 GO:0016887
Vifa4g04734 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 7 222 IPR005895 GO:0017004|GO:0022857
Vifa4g04734 229 ProSitePatterns ABC transporters family signature. 139 153 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04734 Vifa-Chr4 1498430023 1498430712 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04734 24 209 Calmodulin-binding Proteins AT2G36910 25.000 6.96e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04734 - - tpra:123910081 388.652