Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04728 ATGGCTGCTACTGGAGTTCTTGCAGAGATCATAGATGGAGATGTTTACAAATATTATGCAGATGGAGAATGGAAGAAATCCACATCTGGTAAAAGTGTTGCCATCATCAACCCTACTACTAGAAAACCTCAATACAAAGTTCAAGCTTGTTCACAAGAAGAGGTTAATAAGGTTATGGATTCAGCGAAATCGGCACAAAAATCATGGGCGAAAACTCCACTTTGGAAGAGAGCTGAACTTCTTCACAAGGCTGCAGCAATTCTGAAAGAACACAAAGCTGCAATTGCAGAATGCTTAGTCAAAGAAATAGCAAAGCCTGCTAAAGATGCAGTCACTGAGGTTGTAAGATCTGGTGATTTGGTTTCTTACTGTGCTGAAGAAGGAGTCAGGATTCTTGGAGAGGGAAAGTTTTTGGTTTCAGATAGCTTTCCTGGAAATGAAAGGACCAAATATTGTCTCACTTCCAAGATTCCATTAGGAGTTATTTTAGCCATTCCGCCTTTTAACTATCCGGTCAATCTTGCTGTCTCGAAAATTGCTCCTGCATTGATTGCTGGAAATTCTATTGTGCTTAAGCCTCCAACTCAGGGAGCTGTTGCTGCTCTGCACATGGTTCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAGCTGTGTTACTGGAAAAGGTTCCGAAATCGGCGACTTTCTTACAATGCATCCAGGAGTCAACTGTATAAGCTTCACCGGTGGAGATACTGGCATTGCGATTTCAAAGAAGTCGGGTATGATTCCTCTACAAATGGAATTGGGAGGAAAAGATGCTTGCATTGTTCTTGAAGATGCGGATCTTGATTTGGTTGCTGCAAACATCATAAAAGGAGGTTTCTCATACAGTGGTCAGAGGTGTACCGCTGTGAAGGTTGTTCTGGTAATGGAATCAGTGGCTGATGCTTTAGTCGAGAAAGTGAAGGCTAAGGTAGCGAAACTAAGCGTTGGACCACCCGAGGATGACTCTGATATCACACCAGTTGTATCAGAATCATCGGCCAATTTCATTGAAGGCTTGGTGAATGATGCGAAAGAGAAAGACATGAGAATTGCATGGGAAGAGCCATTTGGACCAGTTTTGCCAGTTATTAGGATCAATTCGGTTGAAGAAGGTATCCATCATTGTAATGCTAGCAACTTCGGACTTCAGGGATGTGTTTTCACGAAGGATATCAATAAAGCAATAATGATTAGTGATGCAATGGAATCAGGAACAGTTCAGATAAACTCTGCACCAGCTCGTGGACCGGATCATTTTCCCTTTCAGGGAATAAAGGACAGTGGAATTGGATCACAGGGAATAACCAACAGCATAAACATGATGACAAAAGTGAAAACTACTGTGATAAACTTGCCTAGTCCTTCTTATACCATGGGCTAA 1416 0.4209 MAATGVLAEIIDGDVYKYYADGEWKKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKSGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLSVGPPEDDSDITPVVSESSANFIEGLVNDAKEKDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAIMISDAMESGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04728 471 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 433 458 IPR016162 GO:0016491
Vifa4g04728 471 SUPERFAMILY ALDH-like 15 462 IPR016161 GO:0016491
Vifa4g04728 471 PANTHER ALDEHYDE DEHYDROGENASE 2 358 - -
Vifa4g04728 471 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Vifa4g04728 471 CDD ALDH_F11_NP-GAPDH 15 462 - -
Vifa4g04728 471 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Vifa4g04728 471 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 33 265 IPR016162 GO:0016491
Vifa4g04728 471 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 358 432 IPR016163 GO:0016620
Vifa4g04728 471 Pfam Aldehyde dehydrogenase family 24 358 IPR015590 GO:0016491
Vifa4g04728 471 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Vifa4g04728 471 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 357 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04728 Vifa-Chr4 1496832218 1496834790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04728 1 471 Aldehyde Dehydrogenase Gene Family AT2G24270 85.081 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04728 K00131 - gmx:100789100 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04728 4 1496832218 1496834790 Vifa4g04728 4 1496832218 1496834790 ECH