Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04727 ATGCAACCTTGCAGCAGAGAAATGCAATCCCTCAACTCCCTTTTCAACTCTTGTTCTTCTCCACCTCCTCAAATCCCCATTCCTCTCCAAAACCACCCACAGATCGAAATCAACAACGACAACACATTCCAACAACAAGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCCTGGAACAACGCTAAACCCTTATGGGACCCTAACTCCGACGAGCCTCTCACTTTCCCTTACGACGAACAAACCAACCTCTCCTCCAAGTTTCGTAACCACCAGATCACTGACAAAACCACTGCCGCCGCTCTCATGCTTCTCATGCCCACACCCGCCGATTCCGGACTCCTTCACATGCCAACTGACTTTGACTCCTCTCAAAACGACGTCGTTAACCCTGCTGACGCTTCCGTTCAAGCTCTCTATAACGGTTTCTCCGGATCTCTCCACGCCGTCGCCAATCAAACTCACCATTTTCAACCACCTCAGGTGCAAAGTTTTGGAGGTGGTTCAGTGAGTGCGGGGAACCAGGCGCCGGCTAGTGGTGCTCCGGCTCAGCCAAGGCAGAAGGTTAGGGCTAGGAGAGGTCAGGCTACTGATCCACACAGTATTGCTGAAAGGTTAAGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCAAATGCTAATAAGACAGATAAGGCCTCCATGCTGGATGAGATAATAGATTATGTCAAGTTCCTACAAGTTCAAGTCAAGGTTTTGAGTATGAGTAGATTAGGCGGAGCAGCAGCTGTTGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTATCAGTGACTGCGTCCAAGCTAACGGAAACGGTGGGGTCCACGTTAGAAACCCTAAAACGTCGGCGTCGAACGAGAGTCTCACAATGACAGAGCATCAGGTGGCCAAGCTGATGGAGGAAGACATGGGATCCGCCATGCAATACTTACAAGGGAAAGGTCTCTGCCTCATGCCGATTTCTCTCGCCACTGCAATCTCCACTGCCACGTGTCACAACAGGAACCCTTTGATTAACGCTCCCACCCACAATATCAACGCTATCCCCGCATCCAACGGTGATGGCCCATCCTCTCCCGGAATGTCCGTTAATAGCGCCGTCAAAGATGCTAACTCCGCTTCTAAATCGTAG 1179 0.5047 MQPCSREMQSLNSLFNSCSSPPPQIPIPLQNHPQIEINNDNTFQQQDDFLKQMLSNLPPSSPWNNAKPLWDPNSDEPLTFPYDEQTNLSSKFRNHQITDKTTAAALMLLMPTPADSGLLHMPTDFDSSQNDVVNPADASVQALYNGFSGSLHAVANQTHHFQPPQVQSFGGGSVSAGNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGISDCVQANGNGGVHVRNPKTSASNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHNRNPLINAPTHNINAIPASNGDGPSSPGMSVNSAVKDANSASKS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04727 392 MobiDBLite consensus disorder prediction 364 392 - -
Vifa4g04727 392 Gene3D - 196 263 IPR036638 GO:0046983
Vifa4g04727 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 342 - -
Vifa4g04727 392 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g04727 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 259 IPR036638 GO:0046983
Vifa4g04727 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Vifa4g04727 392 FunFam Transcription factor bHLH66 196 261 - -
Vifa4g04727 392 MobiDBLite consensus disorder prediction 162 205 - -
Vifa4g04727 392 Pfam Helix-loop-helix DNA-binding domain 204 249 IPR011598 GO:0046983
Vifa4g04727 392 SMART finulus 205 254 IPR011598 GO:0046983
Vifa4g04727 392 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g04727 392 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04727 Vifa-Chr4 1496434315 1496437193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04727 185 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 69.802 4.34e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g04727 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04727 - - psat:127138414 675.626