Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04726 ATGCAACCTTGCAGCAGAGAAATGCAATCCCTCAACTCCCTTTTCAACTCTTGTTCTTCTCCACCTCCTCAAATCCCCATTCCTCTCCAAAACCACCCACAGATCGAAATCAACAACGACAACACATTCCAACAACAAGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCCTGGAACAACGCTAAACCCTTATGGGACCCTAACTCCGACGAGCCTCTCACTTTCCCTTACGACGAACAAACCAACCTCTCCTCCAAGTTTCGTAACCACCAGATCACTGACAAAACCACTGCCGCCGCTCTCATGCTTCTCATGCCCACACCCGCCGATTCCGGACTCCTTCACATGCCAACTGACTTTGACTCCTCTCAAAACGACGTCGTTAACCTTTTACAGCCTGCTGACGCTTCCGTTCAAGCTCTCTATAACGGTTTCTCCGGATCTCTCCACGCCGTCGCCAATCAAACTCACCATTTTCAACCACCTCAGGTGCAAAGTTTTGGAGGTGGTTCAGTGAGTGCGGGGAACCAGGCGCCGGCTAGTGGTGCTCCGGCTCAGCCAAGGCAGAAGGTTAGGGCTAGGAGAGGTCAGGCTACTGATCCACACAGTATTGCTGAAAGGTTAAGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCAAATGCTAATAAGACAGATAAGGCCTCCATGCTGGATGAGATAATAGATTATGTCAAGTTCCTACAAGTTCAAGTCAAGGTTTTGAGTATGAGTAGATTAGGCGGAGCAGCAGCTGTTGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTATCAGTGACTGCGTCCAAGCTAACGGAAACGGTGGGGTCCACGTTAGAAACCCTAAAACGTCGGCGTCGAACGAGAGTCTCACAATGACAGAGCATCAGGTGGCCAAGCTGATGGAGGAAGACATGGGATCCGCCATGCAATACTTACAAGGGAAAGGTCTCTGCCTCATGCCGATTTCTCTCGCCACTGCAATCTCCACTGCCACGTGTCACAACAGGAACCCTTTGATTAACGCTCCCACCCACAATATCAACGCTATCCCCGCATCCAACGGTGATGGCCCATCCTCTCCCGGAATGTCCGTTAATAGCGCCGTCAAAGATGCTAACTCCGCTTCTAAATCGTAG 1188 0.5034 MQPCSREMQSLNSLFNSCSSPPPQIPIPLQNHPQIEINNDNTFQQQDDFLKQMLSNLPPSSPWNNAKPLWDPNSDEPLTFPYDEQTNLSSKFRNHQITDKTTAAALMLLMPTPADSGLLHMPTDFDSSQNDVVNLLQPADASVQALYNGFSGSLHAVANQTHHFQPPQVQSFGGGSVSAGNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGISDCVQANGNGGVHVRNPKTSASNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHNRNPLINAPTHNINAIPASNGDGPSSPGMSVNSAVKDANSASKS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04726 395 Gene3D - 199 266 IPR036638 GO:0046983
Vifa4g04726 395 MobiDBLite consensus disorder prediction 165 208 - -
Vifa4g04726 395 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g04726 395 SMART finulus 208 257 IPR011598 GO:0046983
Vifa4g04726 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Vifa4g04726 395 MobiDBLite consensus disorder prediction 165 188 - -
Vifa4g04726 395 MobiDBLite consensus disorder prediction 367 395 - -
Vifa4g04726 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Vifa4g04726 395 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g04726 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 345 - -
Vifa4g04726 395 FunFam Transcription factor bHLH66 199 264 - -
Vifa4g04726 395 Pfam Helix-loop-helix DNA-binding domain 207 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04726 Vifa-Chr4 1496434315 1496437193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04726 188 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 69.802 5.69e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g04726 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04726 - - psat:127138414 681.404