Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04720 ATGTGTGAGAAGGAAAAAGAGAGTGCTCACTCGGCTCTGCTCGACGGAAAATACGAGCTGGGTAGAGTTCTCGGTCACGGAACATTCGCGAAGGTTTACCACGCGCGAAACCTGAACACGGGAAAAAACGTAGCCATGAAAGTAGTTGGAAAAGAGAAAGTGATAAAAGTTGGAATGATGGAACAAATCAAACGAGAAATCTCAGTGATGAAGATGGTGAAACACTCAAACATAGTTCAAATCCACGAAGTCATGGCTTCGAAATCGAAGATCTACATCGCCATGGAACTCGTTCGAGGCGGTGAGCTTTTCAACAAGATCGTCAAAGGTCGGTTGAAAGAAGACGTTGCAAGAGTCTATTTTCAGCAGTTAATCTCAGCCGTTGATTTCTGTCACAGTCGCGGTGTTTACCACCGTGATCTCAAGCCGGAGAATCTCCTCCTCGACGAAGACGGTAATCTGAAGGTATCTGATTTCGGCCTCAGTACTTTCTCCGAGCATTTGAGACAAGACGGATTGTTGCATACAACTTGTGGTACTCCGGCGTATGTTTCGCCGGAGGTTATCGCAAAGAAAGGATACGACGGTGCTAAGGCGGATATTTGGTCTTGTGGTGTCATTCTTTATGTTCTTCTGGCTGGATTTTTACCGTTTCAGGATGATAATTTGGTGGCTATGTATAAGAAGATTTACCGAAGCGATTTCAAATGTCCACCGTGGTTTTCTCTCGATGCGAGAAGGCTTATTACAAAGCTTCTTGATCCGAATCCAAATAGTAGAATCACTATATCACAGATAATGGATTCTTGTTGGTTCAAGAAACCGGTTCCAAAGAGTGTGGCGAGGAGGAAGAAAGAGAAAGAAGAGGAGGAAGAAGAGAAGGGTTTTGGTTTTTTGGAGACGGAGAAATCGTCGATGACGCCGACGATGAATGCTTTTCATATAATATCGTTATCGGAGGGGTTCGATTTGTCGCCATTGTTTGAGGAGAAGAAGAGAGAAGAGAGGGAAGAGATGAGATTTGCGACGGCGGGGACGGCGAGTGGAGTGATATCGAAACTGGAACAAGTGGCGAAGGCGGTGAAGTTTGATGTGAAGAGTAGTGACACGAAGGTGAGGCTTCAGGGGCAGGAAAGAGGGAGGAAAGGGAAGTTGGCGATTGCGGCGGATATTTACGCAGTGACGCCATCGTTTCTGGTGGTGGAAGTGAAGAAAGATAAAGGGGATACTTTGGAGTATAATCAGTTCTGTAGTAAACAGCTTCGTCCTGCGCTGAAGGATATTTTCTGGACTTCTACTGATCCTCCAGCTGCTTGA 1317 0.4571 MCEKEKESAHSALLDGKYELGRVLGHGTFAKVYHARNLNTGKNVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHSNIVQIHEVMASKSKIYIAMELVRGGELFNKIVKGRLKEDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFSEHLRQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRSDFKCPPWFSLDARRLITKLLDPNPNSRITISQIMDSCWFKKPVPKSVARRKKEKEEEEEEKGFGFLETEKSSMTPTMNAFHIISLSEGFDLSPLFEEKKREEREEMRFATAGTASGVISKLEQVAKAVKFDVKSSDTKVRLQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDKGDTLEYNQFCSKQLRPALKDIFWTSTDPPAA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04720 438 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04720 438 CDD STKc_SnRK3 17 271 - -
Vifa4g04720 438 Gene3D Kinase associated domain 1, KA1 310 431 - -
Vifa4g04720 438 Gene3D Phosphorylase Kinase; domain 1 12 104 - -
Vifa4g04720 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vifa4g04720 438 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Vifa4g04720 438 Pfam NAF domain 309 366 IPR004041 GO:0007165
Vifa4g04720 438 Gene3D Transferase(Phosphotransferase) domain 1 105 309 - -
Vifa4g04720 438 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04720 438 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vifa4g04720 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 426 - -
Vifa4g04720 438 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Vifa4g04720 438 CDD CIPK_C 311 426 - -
Vifa4g04720 438 FunFam Non-specific serine/threonine protein kinase 7 296 - -
Vifa4g04720 438 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Vifa4g04720 438 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vifa4g04720 438 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04720 Vifa-Chr4 1494707611 1494708927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04720 11 433 CBL-interacting serine-threonine protein kinases AT4G30960 74.766 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa4g04720 Pkinase 6.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04720 - K07198 gmx:100781111 702.205