Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04715 ATGGCTATGGTCCGCAAGTTATTCTTTCGCAAGCCTCCTGACGGTCTCCTCGAGATCTGTGAGCGAGTTTACGTTTTTGATTGCTGTTTCACAACGGAAGCTTGGAATGTAGAGAAGTACAAAGTGTATGTGGATGGTATAGTTGGTGAGCTTAGAGAGAATGTGCCTGATGCTTCTATTATGGTTTTCAATTTTCGCGAGGAACAGACCAAGAGTTTTATGGAAAATGTGATGTCTGAGTATGATATTACTATAATGGACTATCCTAGGCATTATGAAGGTTGTCCTGTTCTCAAAATGGAGCTAATTCACCATTTTTTAAGGTCTAGTGAAAGCTGGCTCTCACTTGGTCAACACAATGTGTTGTTGATGCATTGTGAACGTGGTGGTTGGCCAGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTTTAGGAAGGTTTATACTGGGGAGCATAGGACTTTGGATATGGTTTATCGGCAGTCCCCGCACGAGCTTTTGCATTTGTTGACGGCATTGAATCCAGTCCCTTCCCAATTGAGGTATCTCCAGTATGTTTCTAGGAGGAATGTGGCCTTAGATTGGCCTCCGCTCAACAGGGCACTCATGTTGGACTGTATTATACTTAGATTCTTCCCAAATTTTGATGGGAAAGGCGGTTGTCATCCCTTGTTTAGAGTTTATGGACAGGATCCTTTTACTGCGGATAAAAGTTCTAAAATGTTGTATTCAATGTCAAAGAGAAGCAAAAACATCCGGGCTTACAAGCAGGGAGAGTGCGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTATTAACTTGAACGATGATATGGAGCGTGAAATGATGATGTTCCGAGTCATGTTCAACACGGCTTTTGTTAGATCCAATATTTTGATGCTTAATCGCGATGAAATTGATGTTCTATGGGATTCCAAAGATCACTTTCCAAAGGATTTCAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCAGATGGTAAATCATGTTTTGAGGAGAAAGAAGGACTGCCGATTGAAGCCTTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGAACCCAAAGGCAGATGCTGCACTAAATGTACTCCAACATATAAGTACTTCTGCTATCATGAATGACAAGTTGGATAAAGTTTCTGATCAGCAAGTGGAAACTGCCACATTATTGAGTGAAACAGATCCAAAAATGCCTCAGAGGAATTCATATGAAGCAATACAATCTTCATCCTCAACTAAGCGATCCCCAAATAATAATACGAGTGGAGAAGAGGATACGACAAACAAAATAGGTGCTATTCCACAGAGGGATGATGCATCAGACATCATCTGTCAGGAGACATTCTGCTCAACTGAAAGAAGTTTGGAATCTCGTAAATGTTCAACAGGGTCAACAAATCTTGACATAAAACTGCAGGCATCCAATCTTGCTTCACCTGGTTCTGTGGATTCTTCTCTTTCCCCTGAAACACCTCCTCTGCGGCCTCCCTCAACTACTCGTGCTAAAGAAGTTCATGATTCTCCTCCTCACCCAGAATCACCTCCTCATCATATTTTGCCTTTGCGATCAGGACATCAATCACAAGGCAGAAGTTATTCACCTGCTTCTAGCTCTACACCTGGGAACCAACTTTTATCTGCCCTCCACAGTAAGTCGCCACCAGCTGCCATTGTTTCACCTCCTTCACTTTCAGCAGTTTCTTCAACTCAGCCGCCCCCTCCTCTTTCTTCCAAAACACCTTCAATTGAAATTCCTCCTGTCAAAACAAGACTTGAGTCTTCTCCTTCACCACCTCTAACTCCACCACATCCACCTACCCCCCCACTAAAAGATCACAAAGTAGTTAGAGAACCTCCACCAGCATCCCCATCACAGCCTCCTTCAAAGAAGGAACTGCATGTTGAAACTGGACCTCCTCCTGTTCCATCTCCTATGAATGAGAAGCCTCGAGATGGAATTTCTCCTTCTCCTACTCCTCCTCCACCTCCTCTAAAAGCAGAGCAACCTGTTAGGTTTAAGCCCCCGCCACCTCCACCACCACCCTGTCTTTCAAGGGAAGCTGCATGTCCTACACCACCCAGTCTTTCATGGGAAGCTGCAAGTCCTACTATAGCACCGCCAGCACCACCTCCACCTCGTCTTTCAAGGGAAGTTACGAGTCCTTCTATAGGACCACCGGCACCACCTCCACCTCCATCAGCAACACTTTCCTCCAGTAATCCTAATCCTTCATTGCAAAAGTGTCCTCCAGTTCCACCACCTCCAATTCCTTTTGGTAAAGAAGGTCTAAAACCAGACGGTGGTTTTCCAATGTCTCTTTCTGTGGGAGGTGATGCAAATAATGTCTCAGGCACATCAGGAAATCAATCGAGTTCACTAACAGGCTCAAAGGGACGAGTTCTATCATGTAATACTGGCTCAAAGAATAACTCCAAAAAGTTGAAACCATTGCATTGGATGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGATGAGACGCAAAAATCTGGCGAAGCTTCCAAAGCTCCTGAGATTGATATGTCAGAGCTTGAGAATCTTTTCTCAGCAGCAGCCCCGAGTTCTGGCCTTGCCAAGAAGTCAAATGTCCAAAGCTCGGCTAGGCCTAAATCTGAGAAAGTGCAACTGATTGAGCATAGGCGGGCATGTAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCATTGCATGATTTAATGAGTTCAGTGCTAGCATTGGAAGAGTCACTTGATGTTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAAATAATCAAGAGTTATAATGGGGAAAAGGAGAAGTTAGGGAGATGTGAACAGTTCTTCATGGAGTTAATGAAAATACCACGGGTAGAATCTAAGCTCAGAGTATTTTCATTCAAGATTCAGTTCTATTCTCAGGTTTCCGATCTTAAAAATAGCTTGAATGCTGTGAATGCTGCTTCAGAAGAGATCAGGAGTTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTACCAGGGGTTCTGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTGACTGAGACACGTGCTCGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTGTTAGATGACAAATTACCAGAAGTTTTAGACTTCTCCAAGGATCTTGCTAATCTAGAGCCAGCGGCAAAGATCCAATTGAAGTTCCTGGCAGAGGAGATGCAAGCTATAAACAAAGGATTAGAGAAAATTGTACAGGAATTATCCACTTCTGAATATGATGGTCCTATATCAGAAAAGTTCCGTAAGAAATTGAAAGACTTCCTCTGTTCTGCTGAAGCTGAAGTCCGCTCATTGGCTTCACTATATTCTGGGGTGGGTAGGAACGTGGACGCGTCAATTCTTTATTTTGGCGAAGATCCATCTCGCTGTCCATTTGAACAAGTTGTCACAACTTTGCTCAACTTCACTCAAATGTTCAACAAAGCCCACGAAGAAAACTGCAAGCAGCAAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCAGAGAGGATATTACCTAAAGCAATCCAGACTGGCAATGTCAAATGA 3726 0.4278 MAMVRKLFFRKPPDGLLEICERVYVFDCCFTTEAWNVEKYKVYVDGIVGELRENVPDASIMVFNFREEQTKSFMENVMSEYDITIMDYPRHYEGCPVLKMELIHHFLRSSESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIFRKVYTGEHRTLDMVYRQSPHELLHLLTALNPVPSQLRYLQYVSRRNVALDWPPLNRALMLDCIILRFFPNFDGKGGCHPLFRVYGQDPFTADKSSKMLYSMSKRSKNIRAYKQGECELIKIDINCHIQGDVVIEGINLNDDMEREMMMFRVMFNTAFVRSNILMLNRDEIDVLWDSKDHFPKDFRAEILFSEMDAAAAVIADGKSCFEEKEGLPIEAFAKVQEIFSHVDWMNPKADAALNVLQHISTSAIMNDKLDKVSDQQVETATLLSETDPKMPQRNSYEAIQSSSSTKRSPNNNTSGEEDTTNKIGAIPQRDDASDIICQETFCSTERSLESRKCSTGSTNLDIKLQASNLASPGSVDSSLSPETPPLRPPSTTRAKEVHDSPPHPESPPHHILPLRSGHQSQGRSYSPASSSTPGNQLLSALHSKSPPAAIVSPPSLSAVSSTQPPPPLSSKTPSIEIPPVKTRLESSPSPPLTPPHPPTPPLKDHKVVREPPPASPSQPPSKKELHVETGPPPVPSPMNEKPRDGISPSPTPPPPPLKAEQPVRFKPPPPPPPPCLSREAACPTPPSLSWEAASPTIAPPAPPPPRLSREVTSPSIGPPAPPPPPSATLSSSNPNPSLQKCPPVPPPPIPFGKEGLKPDGGFPMSLSVGGDANNVSGTSGNQSSSLTGSKGRVLSCNTGSKNNSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDMSELENLFSAAAPSSGLAKKSNVQSSARPKSEKVQLIEHRRACNCEIMLSKVKVPLHDLMSSVLALEESLDVDQVENLIKFCPTKEEMEIIKSYNGEKEKLGRCEQFFMELMKIPRVESKLRVFSFKIQFYSQVSDLKNSLNAVNAASEEIRSSVKLKRIMQTILTLGNALNQGTTRGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKIVQELSTSEYDGPISEKFRKKLKDFLCSAEAEVRSLASLYSGVGRNVDASILYFGEDPSRCPFEQVVTTLLNFTQMFNKAHEENCKQQELEMKKTAESEKKKCESERILPKAIQTGNVK 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04715 1241 SUPERFAMILY Formin homology 2 domain (FH2 domain) 730 1216 - -
Vifa4g04715 1241 Gene3D - 201 340 - -
Vifa4g04715 1241 Gene3D Formin, FH2 domain 827 1211 IPR042201 -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 499 832 - -
Vifa4g04715 1241 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Vifa4g04715 1241 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Vifa4g04715 1241 ProSiteProfiles Formin homology-2 (FH2) domain profile. 827 1225 IPR015425 -
Vifa4g04715 1241 SMART it6_source 827 1241 IPR015425 -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 676 710 - -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 547 572 - -
Vifa4g04715 1241 SMART PTEN_C2_2 197 336 IPR014020 -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 799 832 - -
Vifa4g04715 1241 PANTHER FORMIN-J 676 1226 - -
Vifa4g04715 1241 Coils Coil 1200 1228 - -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 412 451 - -
Vifa4g04715 1241 Gene3D Protein tyrosine phosphatase superfamily 15 200 IPR029021 -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 726 760 - -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 768 783 - -
Vifa4g04715 1241 Pfam Formin Homology 2 Domain 832 1200 IPR015425 -
Vifa4g04715 1241 Coils Coil 1106 1126 - -
Vifa4g04715 1241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 412 457 - -
Vifa4g04715 1241 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vifa4g04715 1241 MobiDBLite consensus disorder prediction 614 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04715 Vifa-Chr4 1493727697 1493751673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04715 816 1223 Protein tyrosine phosphatase (PTP) family AT5G58160 72.195 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04715 - - aprc:113848377 1762.27