Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04707 ATGCTCTTAGGATTGGAGTATCTGAACTTGTCAAAAACTAGTCTTGTTGGTCACATTCCTGACGAAATATCGCAATTTGAAATCAGACCTGAGATCCTTCAAACGTATTTCTATGGATCGGTTAACAGTTGTCCAATCGCTGCGAATCCGGGTCTTTTCAAAAGAAGAAGAGACACTAACCACAGGGGAATGAAGCTAGCTCTTGCATTAACCCTCTCCATGATATTAGCACTGGCCGGTGTTTTGTTTCTGGCATTCGGTTGCAGAAGGAAACAGAAAATGTGGGAAGTGAAACAAGGTTCATACAGAGAAGAACAGAATGTTTCCGGTCCATTTTCCTTCCAAACTGATTCAACAACTTGGGTTGCTGATGTCAAACAAGCAACATCAGTTCCAGTAGTAATCTTCGAGAAGCCGTTGTTGAATATAACTTTTGCAGACCTCTTATCTGCAACTTCGAATTTCGATAGAGGTACCCTTTTGGCTGAAGGAAAGTTTGGACCTGTTTATAGAGGCTTTCTACCTGGAAATATTCATGTAGCAGTAAAAGTTTTGGCTGTTGGTTCTACATTAACAGACGAAGAAGCCGCAAGAGAGCTTGAGTTTCTCGGTAGAATCAAGCACCCTAATCTAGTTCCTCTAACCGGTTATTGTTTAGCTGGTGATCAAAGGATTGCTATATATGATTACATGGAGAATGGAAACTTGCAAAATCTGCTTTATGATTTGCCACTTGGGGTTCAAAGCACTGATGATTGGAGCACAGACACATGGGAAGAAGCTGCTGACACTAATGGAATTCAGAACGTTGGTTCTGAAGGACTACTCACAACTTGGAGATTTCGACACAAAATCGCACTTGGAACTGCAAGAGCATTGGCATTTCTGCATCATGGATGTTCCCCTCCAATAACTCATAGAGCTGTTAAAGCTAGCAGCGTTTATTTGGATTATGATTTGGAGCCAAGGTTGTCTGATTTTGGTCTTGCCAAGATTTTCGGAAGTGGATTGGACGAAGAGATTGCCCGTGGTTCGCCTGGTTATGTTCCGCCTGAGTTTTCTCTACCAGAATTTGAGTCACCAACGCCGAAATCTGATGTATATTGTTTCGGTGTTGTTCTGTTTGAGCTATTAACTGGAAAGAAACCGGTTGAAGATGATTACAGTGATGATAAAGAAGCAACGAGTTTGGTAAGTTGGGCTAGAGGACTTGTAAGAAAGAATCAAACTTCAAGAGCTATTGATCCGAAAATTCGCGATACGGGATTGGATGAACAAATGGAGGAGGCTATAAAGATTGGATATCTATGCACAGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACAACTAACTAG 1392 0.4145 MLLGLEYLNLSKTSLVGHIPDEISQFEIRPEILQTYFYGSVNSCPIAANPGLFKRRRDTNHRGMKLALALTLSMILALAGVLFLAFGCRRKQKMWEVKQGSYREEQNVSGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLAVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCLAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEAADTNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPITHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSLPEFESPTPKSDVYCFGVVLFELLTGKKPVEDDYSDDKEATSLVSWARGLVRKNQTSRAIDPKIRDTGLDEQMEEAIKIGYLCTADLPFKRPTMQQIVGLLKDIEPTTN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04707 463 Gene3D Phosphorylase Kinase; domain 1 115 230 - -
Vifa4g04707 463 Pfam Protein kinase domain 159 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04707 463 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 97 458 - -
Vifa4g04707 463 SUPERFAMILY Protein kinase-like (PK-like) 132 455 IPR011009 -
Vifa4g04707 463 FunFam Putative LRR receptor-like serine/threonine-protein kinase 116 230 - -
Vifa4g04707 463 ProSiteProfiles Protein kinase domain profile. 155 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04707 463 Gene3D Transferase(Phosphotransferase) domain 1 231 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04707 Vifa-Chr4 1491470048 1491471634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04707 5 462 Receptor kinase-like Gene Family AT1G55610 35.244 2.87e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vifa4g04707 Pkinase 3.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04707 - - gmx:100797738 778.089