Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04704 ATGGCTGAGCACCGCGTATCCGAACCTCTCCCAGTGGGACCCACTCAGCTTGGAAACAAATCTGAAACTAACGATGGACAAAACCAACACGAAAAAGAACGAGTCGGTGATTCACCGTGTGTCACCGAGTCGAAACAAGGCGATTCAGCGAGTTCCATTGAACAATCGGTAAAGCGCAACTCAGAAACCCTAGTTGTTCTTCCATCTTCGATTTCGCAGAAGCAGAGTTTCGACACGGATTTGCAGGGGAACCCTAATTCGCGGAATTCGGGTGATAAAGCTGAAAATAAGGAAACAGGTGGATCTCCTGAAAAGGAAATTACTGCAAGTGAAGCAGCCCTGACACCTCCAACTCCGACTGAAAATCAGCTTCCAATGATTGTGTGTTCAACACCACTGCCTGAGCTATCACCAAATTCTTCTACAAAATCTTTATCACATGTTCCCATTTCGAATTTACAAATACATAAAATGTCTCCTCCAAGCATTGGTTACACACCTCTACTAGTAGTAAGCAAAAAAAATCCTTCTGGTGGTAAAGCCTTATCTTCAGTTTCTGTTCCAAGGACATCATCATCCGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTCAAGAGTCCTACTACAGGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTGGTGCTAAGAAGATTGAATGCTGGGATCATTCAGGTCATGTGATAGAGACTGTTTATAAAAGTGAGCACAGTCATGATCCCCCGCGGAAGCCTAATTTCCTTAGGGAAAGTAAGTTTGCATCTCCCAAAGAACCTACTGCAATGAACAGTGTTTTAGTGAAGCCTGCCAATGTCCTGAAAGATTCTGATCCGTCCACATCTTCCAAAGCTCAAGAAGAAGCACTTTGCAGTGCTGAGAAGAAACCTCAAAACTCGTCTAATATCAATGGAGATGGTAAAGTTATTTTGAAGGAGGAACATCTAGGCGAGCCAGAGCCAAAACGAAGAAAGGAGAAAGGCGACTTAATTCACTCAGATTCTCCTGTAAAACCTGGAAAGAAACCCAAGTTTGTTGTACATGCAGCAGGAGCTGTGGGGATATCAGGTGATGGCTACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAGGGCAACCCACATCCCAGAAACTACTACAGATGCACTTCTGCCGGATGTCCTGTCCGGAAGCACATCGAGACAGCCGTAGACAACTCAGATGCAGTCATCATAACTTACAAGGGTGTACATGATCACGACACTCCTGTGCCGAAGAAACGACATGGCCCACTAAGGGCTCCTCTCGTGGCTGCTGCCGCACCTGCCTCCATGAATAATTTGCAGTTGATTAAACCAGGCTCACCACTGCAAAACCTTAAAACTTCTACTCAATGGTCAGTGGACACAAAAGGAGAACTAACTGGGGAAGCCATAGCCATGGACCTTGGGGGTGAGAAAGCAATAGAGTCAGCTCAAACTCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTAA 1524 0.4528 MAEHRVSEPLPVGPTQLGNKSETNDGQNQHEKERVGDSPCVTESKQGDSASSIEQSVKRNSETLVVLPSSISQKQSFDTDLQGNPNSRNSGDKAENKETGGSPEKEITASEAALTPPTPTENQLPMIVCSTPLPELSPNSSTKSLSHVPISNLQIHKMSPPSIGYTPLLVVSKKNPSGGKALSSVSVPRTSSSDGYNWRKYGQKQVKSPTTGSRSYYRCTQSNCGAKKIECWDHSGHVIETVYKSEHSHDPPRKPNFLRESKFASPKEPTAMNSVLVKPANVLKDSDPSTSSKAQEEALCSAEKKPQNSSNINGDGKVILKEEHLGEPEPKRRKEKGDLIHSDSPVKPGKKPKFVVHAAGAVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPLRAPLVAAAAPASMNNLQLIKPGSPLQNLKTSTQWSVDTKGELTGEAIAMDLGGEKAIESAQTLLSIGFEIKPC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04704 507 SUPERFAMILY WRKY DNA-binding domain 362 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 MobiDBLite consensus disorder prediction 25 39 - -
Vifa4g04704 507 MobiDBLite consensus disorder prediction 1 125 - -
Vifa4g04704 507 MobiDBLite consensus disorder prediction 42 90 - -
Vifa4g04704 507 ProSiteProfiles WRKY domain profile. 193 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 SMART WRKY_cls 192 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 SMART WRKY_cls 365 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 SUPERFAMILY WRKY DNA-binding domain 189 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 FunFam WRKY transcription factor 352 426 - -
Vifa4g04704 507 MobiDBLite consensus disorder prediction 284 315 - -
Vifa4g04704 507 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 447 IPR044810 GO:0003700
Vifa4g04704 507 Gene3D WRKY domain 351 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 Gene3D WRKY domain 180 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 MobiDBLite consensus disorder prediction 317 350 - -
Vifa4g04704 507 ProSiteProfiles WRKY domain profile. 360 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 MobiDBLite consensus disorder prediction 280 351 - -
Vifa4g04704 507 Pfam WRKY DNA -binding domain 194 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04704 507 Pfam WRKY DNA -binding domain 367 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04704 Vifa-Chr4 1490858910 1490862548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04704 182 507 WRKY Transcription Factor Family AT4G30935 58.841 2.49e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g04704 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04704 - - mtr:11440414 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04704 4 1490858910 1490862548 Vifa4g04704 4 1490858910 1490862548 ECH