Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04696 ATGTTTGACCGTGGTGATTTCAAATCACAGTACATGGGTGGCCAACGAGAAAGCTCTTTTAGGTGGGATGTCTTGGATTCTAGACTATCTTCATCTTCTGATGTCAGAGTTGCAAAATCTGCATTTGCTATTGATAAATTAAGCCATGGTAATCATGGAAGCAGCACAACCTCTAGGTCTTTTAAGAAAGGAATGAGAAAGGGATCTGAAGGATTGAAGTCAATCGGTCGATCGCTTGGACTGGGAGTATCTAGGGCGGTGTTTCCAGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCCCAAGACAAATTTTTACTCTCTTGGAATAAATTATTTGTTATCTCATGCATTTTGTCTGTGTCTGTGGATCCTCTGTTTTTTTATCTCCCTGTCATCAATGATCAATTACACTGTCTGGGTATTGACAGAAAGTTGGCGACAACAGTCACCACCTTGAGGACAATCATTGATGCTTTCTATCTTATACACATGGCTCTTCAATTTCGTACTGCTTACATTGCTCCATCATCTCGTGTCTTTGGGCGGGGCGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACCTGCGACGATATTTCATCATTGATTTCCTATCCGTGTTGCCGATACCACAGATTGTTGTTTGGAGATTTCTTCAGAGGTCTAAGAGTTCAGATGTACTAGCAACAAAGCAGGCATTGCTGTTCATTATATTGCTTCAGTACATTCCTAGATTTCTTCGAATGGTACCATTAACTTCAGAACTCAAGAGAACTGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGATGTTATACATGCTTGCCAGTCATATAGTTGGTTCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAAGCTTGCAGTGATAATGGGTGCAACAAAAACTACCTGTATTGTGAGAACCAGCACACGGAAGGTTATAGTGCCTGGCAAAATAAAAGCAAAGCTATTTTTAAGTCAAGGTGCTCTGTAGATGATGATCCTCCACCTTTTGATTATGGAATTTTTACGCAAGCCTTGTCGTCTGGTATCATTTCATCTAAGAAGTTCATCTCAAAATATTGTTATTGTTTATGGTGGGGGCTGCAAAATTTAAGTACCCTTGGTCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTTGCCATAGCTGGTCTCATCCTCTTCGCACTTCTGATTGGCAACATGCAGACATATCTTCAGTCCCTTACCCTTAGGCTTGAGGAAATGAGAGTCAAAAGGCGGGATTCAGAACAATGGATGCATCATCGCTTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAATGGTTGGCAACACGTGGAGTAGATGAAGATGTTTTGGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTAGTTACAGAGAATACTTATATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGACGGCTTGAGAGTGTTACTACAGATGGCGGGAGAAGTGGATTTTTCAACCGCAGTCTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGACCCCAAATCTGGTTCTAATCTTCCAACTTCTACTCGAACTGTTAAGGCGTTAACAGAGGTTGAGACTTTTGCCTTGACTGCCGATGAGCTGAAATTTGTTGCTAGTCAGTTTAGGCGTCTTCACAGTAGACAGGTTCAGCACACTTTTCGTTTTTACTCTCAGCAATGGAGAACTTGGGCTGCTTGCTTTATTCAAGCAGCATGGCGTCGATATTGTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGAAGAAGCAGATGAGTCAGAAGGAACTCACGGCAACTCTGGCGGCAGTTCCTCCAGCCTTGGTGCTGCCTTATTAGCCTCAAAGTTTGCCGCACGCACTCTACGTGGTGTACACCGCAATCGACTTGCTAAGACTGCCAGAGAGTTGGTGAAATTACAGAAACCTCCGGAGCCAGACTTTACAGCAGATGATGCAGACTAA 2208 0.4275 MFDRGDFKSQYMGGQRESSFRWDVLDSRLSSSSDVRVAKSAFAIDKLSHGNHGSSTTSRSFKKGMRKGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLSWNKLFVISCILSVSVDPLFFYLPVINDQLHCLGIDRKLATTVTTLRTIIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLQRSKSSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLMLYMLASHIVGSFWYLLAIERNDSCWQKACSDNGCNKNYLYCENQHTEGYSAWQNKSKAIFKSRCSVDDDPPPFDYGIFTQALSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRRYDQYKWLATRGVDEDVLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLVTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEADFCGEELLTWALDPKSGSNLPTSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEEEADESEGTHGNSGGSSSSLGAALLASKFAARTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04696 735 Gene3D Jelly Rolls 504 624 IPR014710 -
Vifa4g04696 735 Pfam Cyclic nucleotide-binding domain 529 617 IPR000595 -
Vifa4g04696 735 ProSiteProfiles cAMP/cGMP binding motif profile. 506 636 IPR000595 -
Vifa4g04696 735 SUPERFAMILY cAMP-binding domain-like 435 626 IPR018490 -
Vifa4g04696 735 SMART cnmp_10 506 637 IPR000595 -
Vifa4g04696 735 FunFam Cyclic nucleotide-gated ion channel 1 433 497 - -
Vifa4g04696 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 729 - -
Vifa4g04696 735 MobiDBLite consensus disorder prediction 668 688 - -
Vifa4g04696 735 Gene3D - 113 431 - -
Vifa4g04696 735 Gene3D Helix hairpin bin 434 497 - -
Vifa4g04696 735 CDD CAP_ED 506 637 IPR000595 -
Vifa4g04696 735 FunFam Cyclic nucleotide-gated ion channel 1 504 622 - -
Vifa4g04696 735 SUPERFAMILY Voltage-gated potassium channels 101 428 - -
Vifa4g04696 735 MobiDBLite consensus disorder prediction 716 735 - -
Vifa4g04696 735 Pfam Ion transport protein 109 433 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04696 Vifa-Chr4 1488198927 1488208777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04696 12 732 Ion Channels AT5G57940 77.072 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04696 K05391 - gmx:100784309 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04696 4 1488198927 1488208777 Vifa4g04696 4 1488198927 1488208777 ECH