Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04686 ATGGAGTTCAAATTTCGTGCTGTGGACAACGTCAAACCAGAAACAACATCGCATTCTCCTTCCCCGGTCATATATCTTCCAGATCGATCACTTCAAATGAACCATGGTTTTTCTGGTTTCCGACAACCATTAACCGGCGAGGAGGCAGTTCGGCGAGAACTTGAGAAGGAGGTAATCCGCAGAGAAATGTTGCGGCGATTAGAGTTAGAGGAAGAAGTGAGGAGGGAAATTGAAATCGAGAGAAAATTGGGGATTTCAATACCCAGGCCGCTGAATATGCAGGGACTACTGTCGCAATGGTCAAATTCATCGACGATGAACCCTGTTGCTGTTGGCCATATTGGTGCGTCGCAACCACCCTTGATTTTGCCTCCTACGGAAATCAATCCTGCTCCAGAAATCAGTGACAAGGACAAAATTATAGTGTTGACTAAGCCAGATCCCGAACTTTATAATGCAAAACGAAAAGCAACAACAGTGGCTGTTTCTGAGACAGAACCTTCTGCATTTGATTTGAAGAAAAAATTGAAGAAGGAGTGGAGTTGTTCTCTGTGTGAGATTAAAGCCACAAGTGAGAGTGGCTTGAATGCTCATCTGAATGGTAAGAAGCACAAGATCAAGGAAGCTAGACAATATAAAAAGAGTTGCAGGAGCAACAGAAAAAGTGGAAAACTTGTGAATGTAAAGGCCACTGAAAAAGTGGATACAATGATGGTTAATAAACTTGAAAATGAATCTAAAAATGAAGAGCAACTTATAGAGACAGTAGCTGATAATGATATAACGGTAACACAATCAAAGAATGAGAAGAAGCTTTGTGAGATGATGGCTGATAATATTGTTACAAAGTGTGAAAATGGGGAGATGCTTGAGGAGAAAAGCCAATGTGTAGGCTTTTTGAAAAGTGATCAAGACACTGCAACTGAAGAAACTGGGAAAGGTAAGTTCATTAACCAAAGGAAGGAAAGTTAA 972 0.4095 MEFKFRAVDNVKPETTSHSPSPVIYLPDRSLQMNHGFSGFRQPLTGEEAVRRELEKEVIRREMLRRLELEEEVRREIEIERKLGISIPRPLNMQGLLSQWSNSSTMNPVAVGHIGASQPPLILPPTEINPAPEISDKDKIIVLTKPDPELYNAKRKATTVAVSETEPSAFDLKKKLKKEWSCSLCEIKATSESGLNAHLNGKKHKIKEARQYKKSCRSNRKSGKLVNVKATEKVDTMMVNKLENESKNEEQLIETVADNDITVTQSKNEKKLCEMMADNIVTKCENGEMLEEKSQCVGFLKSDQDTATEETGKGKFINQRKES 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04686 323 PANTHER OS06G0651300 PROTEIN-RELATED 1 295 - -
Vifa4g04686 323 MobiDBLite consensus disorder prediction 306 323 - -
Vifa4g04686 323 SUPERFAMILY beta-beta-alpha zinc fingers 159 216 IPR036236 -
Vifa4g04686 323 Gene3D Classic Zinc Finger 171 215 - -
Vifa4g04686 323 SMART ZnF_U1_5 177 211 IPR003604 GO:0003676|GO:0008270
Vifa4g04686 323 MobiDBLite consensus disorder prediction 304 323 - -
Vifa4g04686 323 Pfam Zinc-finger of C2H2 type 180 204 - -
Vifa4g04686 323 Coils Coil 239 259 - -
Vifa4g04686 323 Coils Coil 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04686 Vifa-Chr4 1483940871 1483943068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04686 138 210 C2H2 Transcription Factor Family AT2G19380 38.356 1.67e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04686 - - psat:127138448 383.259