Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04679 ATGGAGGCACCGCTACTTTCGAAGTTGGAAGAGGGGGATGATTCTTTCTTTAACTACCTCAACTCTCTATCTCCTTTAAACTCACTTGCCATGGATTCTTCTCTTTTCACATCACCCGATGTCACTTTTTTTGAGGATTCCACATTCTTCATTGCTACCAATAACCTTTTGGATACACTAAACCCTCAAGTTGAGCTATCCAGTCAACAAGCTGTGCAATATGGTTCTTGTAGCCCACAATATCAACAAGCTGTGCAATATGGTTCTTGTAGCCCACAATATCAACAACCTCTAATCTCAAGGGATGATGATGTTGACTACCTTCTTGGATTACTTGACATGCAAGAACCAAATGTACAAGATGACTCTATCAAAGATTTAATTGAGGGTGAAATGTATATTTCAGAAGTTGGTCAGATTGAAGCAAACACTCAAGTGCCAGATTGTGATTACAATAACTTAATTACTACAACACAATCTTTTATTCCTTTACCACAATCTACCACTCACACTAGTAATTATAAAATGCAAACTTTTGATCCACTTGCTTCTGAAAATAATCCTTATGAACCAATTGCTGCCACTTACACAAATCAAACATGGAACAATCTTCCCAATTTTGCTCTAATGGATACCAATCCAATTCAGACAGGGAATGTCGAGCTTGTGCGTATTAGACACAGTATATGGATGGGTCTTCTAGACTATGGGAAGACCACTTATACTTCTAGCATCACTTCCTCCTGTTCTTTAAAATCTGATGAGAGGAATGCAATTCCAGCCTCAAATCATTACGGAGGCATAGAAAGTGAAATGACGTTTTCTGGAAGGAATCCTGAACTGCCGGGCTGCACTTCTTCTTTGCATCTTTCTGAAAACCACCTATCCCAGGTCCCCGCATCAATGGAAAGACATTTGGGGCCATCTGATAACGAAGTTCCGTCTACAAAAGATTTCACTAGGTTCTTAGTTCACATTACGGGTGACGATTTCTGTTGGAGTACCCTCAAAATGAAGAGTGAACGATTGGATCCTTCAAACATGAAAAAAAAGAGGAAAGGTCAGATTGAAAAGGAAGAGGAAAGTGATGATTTCTGTCCGAATACCCTCAAAAAGAAGAGGAAAATCCACAAATCAGGCCACTGTCAATGTAAAAAATCAGGCTGCCTGAGGAAACATTGTGAATGTTTTAAGGGTGGTGTTGGTTGCTCCCCAAGCTGTAAGTGTCAAGGATGCCAGAATATATATGGTAGAAAGGATAGGGAGGCGGAAACAAAATCGGAGCTTGAAGAAACAGAAGCATTACAGATTTTGAGCCAAAAGCAAGAGCCTGTGGAATCAAATGCTATTGGATCAGTGTATTCGTATGAAAATATAGAATGA 1383 0.3962 MEAPLLSKLEEGDDSFFNYLNSLSPLNSLAMDSSLFTSPDVTFFEDSTFFIATNNLLDTLNPQVELSSQQAVQYGSCSPQYQQAVQYGSCSPQYQQPLISRDDDVDYLLGLLDMQEPNVQDDSIKDLIEGEMYISEVGQIEANTQVPDCDYNNLITTTQSFIPLPQSTTHTSNYKMQTFDPLASENNPYEPIAATYTNQTWNNLPNFALMDTNPIQTGNVELVRIRHSIWMGLLDYGKTTYTSSITSSCSLKSDERNAIPASNHYGGIESEMTFSGRNPELPGCTSSLHLSENHLSQVPASMERHLGPSDNEVPSTKDFTRFLVHITGDDFCWSTLKMKSERLDPSNMKKKRKGQIEKEEESDDFCPNTLKKKRKIHKSGHCQCKKSGCLRKHCECFKGGVGCSPSCKCQGCQNIYGRKDREAETKSELEETEALQILSQKQEPVESNAIGSVYSYENIE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04679 460 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 377 433 IPR044522 GO:0003700
Vifa4g04679 460 SMART CXC_2 377 418 IPR033467 -
Vifa4g04679 460 ProSiteProfiles CRC domain profile. 382 417 IPR005172 -
Vifa4g04679 460 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 381 414 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04679 Vifa-Chr4 1482382957 1482385020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04679 377 446 CPP Transcription Factor Family AT3G22760 50.000 1.61e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa4g04679 TCR 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04679 - - tpra:123899981 281.952