Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04672 ATGCAGCAAGGTGATCAAACTGTTTTGAGCTTGAGACCTGGTGGTGGTCGAGGAAGCAGGCTTCTTGCGCCTAGATTTGAATCCTCCTCCTCCAACTCATCGGTTTCACCGGCTTTTGGCTCCTTTTCGTCTGATCTTCTTATTCAACATGGTGCCTCTCAACCTCGTTTCGCATTCAAGATTGGAGATTCACAGTTTGAAGGCCGTGAGCGGGTGCGATATTCCAGAGAAGAGCTCCTGCATATCAAGGAGACTGTTGAGGAGACCCCTGAAGATATTTTAAAGCTCAGACATGAAATTGAAGCTGAATTTTTTGGTGAAGATCAAAGTTGGGGCCGTGTTGAAAGCAACGCTCCAACTCAAACTCAAACTCGATATGCTGAACCAGATAATCGTGACTGGCGTGGCCGATCTGCGCAACTTCCAGTTAACGCAGATGAGAGGTCTTGGGATAATATCAAGGAGAGTAGAGAGTTTGGCACTAGTCAACCGAATTCTGAGTACCCACGTTCTAACCAAGCGGGAGGACCTGCTCCTATTCTAGGAAAGGCTAAGGTACCATGGTCTTTTAGAAGGGGAAGTCTCTCTGACAAGGACCGTGTCTTAAAAACAGTTAAAGGTATACTGAATAAGTTGACTCCAGAAAAATTTGATCTTTTGAAGGGTCAGTTGATCGATTCTGGCATTACATCAGCTGATATATTGAAGGGAGTTATTTCACTGATATTTGACAAGGCAGTCCTTGAACCAACATTCTGCCCCATGTATGCGCAACTGTGTTCTGATCTTAATGAAAAGCTGCCCCCATTCCCATCTGAAGAACCTGATGGTAAAGAAATAACTTTTAAGAGAGTACTCTTGAATAACTGCCAGGAAGCTTTTGAAGGCGCTGGTAAACTGAGGGAAGAATTGGCGCAGATGACTTCTCCTGAGCAGGAGTCGGAGCGACGTGACAAGGAAAGACTTGTCAAGATTCGTACCCTTGGAAACATCCGTTTAATTGGTGAGCTGCTGAAGCAAAAAATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGAGCTTCTGACAGCAAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCCATATGTCATTTTTTCAACACTATTGGCAAGCAGCTGGATGAAAGCCCAAAATCACGACGTATAAATGATATGTATTTTGGCCGATTGAAAGAATTGAGTACAAATCCCCAACTTGTACCAAGGATGAGATTCATGGTGCGCGATGTAATAGATTTGCGTGCGAGTAACTGGATCCCAAGACGTGAAGAGGCAAAGGCCAAAACCATATCTGAAATCCATTCTGAGGCTGAAAAGAATCTTGGATTGCGTCCAGGTGCCACTGCTAGTATGAGAAACACCCGTGTTTCTGGAATTCAAGGAAATACCAGCGCTGGGGGCTTTCCTATTGCACGACCTGGTACCGGAGGTTTAATGCCTGGGATGCCTGGTGTGAGGAAGATGCCTGGTATGCCTGGTATTGATAATGATAACTGGGAGGTGCCTAGGACTAGATCTATGCCAAGAGGAGACATGTCGCAAACTGGAGGACGTGGCCAGTCTCCTTTCCTTTCCAAGCCATCCCCTGCCTTAAACTCAAAGTTACTGCCTCAAGGTAGCAGTGGTCTTGTAAGTGGGAAGAATAGTGCACTGGTTCATGGAGGTCGTCCAACAAGCTTTGCTTCAGCTTTAGAGCCTGTGTCTCAAATCCCTTCAACCGTTAAATCTGTTTCTGCTGTATCCCCTGAGAAGCCCCAGGCCCCAGCTGCAAAATTGAATATTGATGACGTTCATCGCAAAACCGTCTCTCTTCTGCAAGAGTATTTCAATGTTCGCCTTTTGGATGAGGCATTGCAGTGCGTGGAGGAATTAAAAGCTCCGACTTATTACCCAGAGTTTGTCAAGGAATCCATTTCCCTTGGGCTTGATAAGAGTCCACCATGTGTTGAACCTGTTGCTAAGCTTATTGAGCATCTGTTTTTGAAGAAGATTCTCTCAGCAAGAGACATAGGTACTGGATGTTTGTTATTTGCTTCTCTGCTCGATGATATTGGCATCGATTTACCAAAAGCACCGAGCAACTTTGGTGAGATAATAGGGAAACTAGTTTTGGCTGGTGGTTTGGACTTTAAGGTGGTTAGAGAAATCCTTAATAAGGTGAGTGATGACTACTTCCAGAAAGCAATATTCAAAGCTGCACTCGAGGTAATTAGCTCTTCATCTGGGCAAGCTGTGTTGGATGCACAAGCATCTGATATTGAGGCATGCCAAGCACTGATCCAGTGA 2319 0.4506 MQQGDQTVLSLRPGGGRGSRLLAPRFESSSSNSSVSPAFGSFSSDLLIQHGASQPRFAFKIGDSQFEGRERVRYSREELLHIKETVEETPEDILKLRHEIEAEFFGEDQSWGRVESNAPTQTQTRYAEPDNRDWRGRSAQLPVNADERSWDNIKESREFGTSQPNSEYPRSNQAGGPAPILGKAKVPWSFRRGSLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPDGKEITFKRVLLNNCQEAFEGAGKLREELAQMTSPEQESERRDKERLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGASDSKVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFGRLKELSTNPQLVPRMRFMVRDVIDLRASNWIPRREEAKAKTISEIHSEAEKNLGLRPGATASMRNTRVSGIQGNTSAGGFPIARPGTGGLMPGMPGVRKMPGMPGIDNDNWEVPRTRSMPRGDMSQTGGRGQSPFLSKPSPALNSKLLPQGSSGLVSGKNSALVHGGRPTSFASALEPVSQIPSTVKSVSAVSPEKPQAPAAKLNIDDVHRKTVSLLQEYFNVRLLDEALQCVEELKAPTYYPEFVKESISLGLDKSPPCVEPVAKLIEHLFLKKILSARDIGTGCLLFASLLDDIGIDLPKAPSNFGEIIGKLVLAGGLDFKVVREILNKVSDDYFQKAIFKAALEVISSSSGQAVLDAQASDIEACQALIQ 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04672 772 Pfam MA3 domain 609 720 IPR003891 -
Vifa4g04672 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 601 762 - -
Vifa4g04672 772 MobiDBLite consensus disorder prediction 505 561 - -
Vifa4g04672 772 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 53 758 IPR045208 GO:0003743
Vifa4g04672 772 SMART if4_15 202 428 IPR003890 GO:0003723|GO:0005515
Vifa4g04672 772 MobiDBLite consensus disorder prediction 1 34 - -
Vifa4g04672 772 Gene3D - 601 766 - -
Vifa4g04672 772 SMART ma3_7 608 720 IPR003891 -
Vifa4g04672 772 Gene3D - 194 429 - -
Vifa4g04672 772 ProSiteProfiles MI domain profile. 607 729 IPR003891 -
Vifa4g04672 772 MobiDBLite consensus disorder prediction 157 179 - -
Vifa4g04672 772 MobiDBLite consensus disorder prediction 519 558 - -
Vifa4g04672 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 193 429 - -
Vifa4g04672 772 Pfam MIF4G domain 202 428 IPR003890 GO:0003723|GO:0005515
Vifa4g04672 772 SUPERFAMILY ARM repeat 603 758 IPR016024 -
Vifa4g04672 772 SUPERFAMILY ARM repeat 196 430 IPR016024 -
Vifa4g04672 772 MobiDBLite consensus disorder prediction 115 141 - -
Vifa4g04672 772 MobiDBLite consensus disorder prediction 157 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04672 Vifa-Chr4 1481171805 1481176839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04672 1 770 Eukaryotic Initiation Factors Gene Family AT5G57870 63.118 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04672 K03260 - gmx:100781275 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04672 4 1481171805 1481176839 Vifa4g04672 4 1481171805 1481176839 ECH