Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04667 ATGGAAGCCAGCGCCGGATTAGTCGCTGGTTCGCATAATCGTAACGAGCTTGTTGTCATTCATGGCCATGAAGAGCATAAACCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTTGGACTCACTGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGCGGTTTTCCGGTGTGTCGGCCGTGCTATGAATATGAAAGAAGGGAGGGGAGACAGCTCTGTCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCTCGGGTTGAGGGAGACGATGACGAGGAAGATGTGGACGATATTGAACATGAATTCAACATTGAAGAGAAAATGAACAATCATGATCATTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTATGGCAGAGGACCTGAAGATGACGAGAATGCGCATTTCCCAGCTGTTATTGCTGGCGGTCGCTCTCGACCTGTGAGTGGTGAGTTCCCAATTTCATCTCATGGTTATGGAGAGCAGATGTTATCTTCTACGCTGCATAAACGAGTTCATCCATATTCCGCATCTGATCCTCGAGGTGCGGGATGGGATGAAAAGAGAGAAGATGGATCATATGATAGAGTGGATGACTGGAAATTACAGCAAGGAAATTTGGGACCTGAACCTGATGAAGAACTAGATGGAGCCATGTCGGATGAAGCAAGACAGCCACTGTCAAGGAAGGTACCGATAGCATCGAGCAAAATCAATCCATATAGGATGGTGATCGTGGCACGTCTTGTTATTCTTGCCTTCTTCCTCCGATACAGACTTATGAACCCAGTTCATGATGCAATGGGACTATGGCTAACTTCCATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTAGATCAGTTCCCCAAATGGTATCCTATTGATAGAGAAACCTACCTCGACCGTCTTTCAATCAGGTACGAGCGTGAAGGTGAACCAAACATGCTTGCGCCGGTCGATGTCTTTGTCAGTACTGTGGATCCCTTGAAGGAACCTCCTCTGAATACGGCAAACACAGTTCTTTCGATTTTGGCAATGGACTACCCCATTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCTTGTCAGAAACTGCGGAGTTTGCTAGGAAGTGGGTGCCGTTCTGTAAGAAATTTTTGATAGAACCCCGCGCACCAGAGATGTACTTTTCTGAGAAAATTGACTATCTAAAGGACAAAGTGCAGCCTACTTTTGTCAAAGAACGTCGATCCATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAACGCGCTTGTGGCAAAAGCCCAAAAGGTTCCAGCAGGAGGATGGATTATGCAGGATGGAACACCATGGCCAGGAAACAATACTAAAGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGCGGAGGTCATGATACTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTATCCAGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTCCGAGTCTCTGCTGTACTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAACAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTAATGGACCCACAAACAGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGACGGCATTGATACAAATGATCGATATGCTAATAGGAACACAGTTTTCTTTGATATTAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTCGGCACAGGGTGTGTATTTAGAAGACAAGCTTTATATGGATATAATCCTCCCAAGGGTCCCAAGCGTCCCAAAATGGTCAGTTGTGATTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGTTAAGCATGCAATGACCGATGCAAATGGAGAGGCTACAAGCCTAAGAGGAATGGATGATGACAAAGAATTACTGATGTCCCAGATGAATTTTGAGAAGACATTTGGGCAGTCATCAATTTTCGTGACTTCAACCTTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGCGGATATGAAGATAAAACTGAATGGGGGCTTCAGCTTGGTTGGATTTATGGATCTATTACAGAGGATATTCTAACAGGCTTTAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGTATGCCAAAGAGAGTAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTCAACCAGGTGCTTCGTTGGGCCCTTGGCTCCATTGAGATCTTCTTCAGTCATCATTGCCCCTTATGGTATGGCCACAAGGAAGGGAACCTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTATCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTAGTTTGTACTTTGTTGCTCTCTTCACTTCAATCATGGCAACGGGCATTCTTGAGTTAAAATGGAGTGGTGTCAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATCGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTAAAGGTTCTTGCTGGAATTGACACCAACTTCACTGTTACAGCCAAGGCAACAGATGATGAGGACTTTGGAGAATTATACGCCATTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTAATAATCAATATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGATATCAATCATGGGGACCTCTATTCGGAAAACTCTTCTTTTCCTTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTGATATGGTCAGTGTTGTTGGCTTCCATTTTCTCCTTGCTATGGGTAAGAATTGACCCGTTCGTGCTCAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTAA 3120 0.4474 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEEKMNNHDHSAEAMLHGKMSYGRGPEDDENAHFPAVIAGGRSRPVSGEFPISSHGYGEQMLSSTLHKRVHPYSASDPRGAGWDEKREDGSYDRVDDWKLQQGNLGPEPDEELDGAMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWYPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPLKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFLIEPRAPEMYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVRINALVAKAQKVPAGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKVKHAMTDANGEATSLRGMDDDKELLMSQMNFEKTFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGLQLGWIYGSITEDILTGFKMHCRGWRSIYCMPKRVAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGHKEGNLKWLERFAYANTTIYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFASLYFVALFTSIMATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTAKATDDEDFGELYAIKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04667 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Vifa4g04667 1039 CDD mRING-HC-C4C4_CesA 35 85 - -
Vifa4g04667 1039 MobiDBLite consensus disorder prediction 206 233 - -
Vifa4g04667 1039 Pfam Cellulose synthase 331 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa4g04667 1039 FunFam Cellulose synthase 448 622 - -
Vifa4g04667 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 857 IPR029044 -
Vifa4g04667 1039 SUPERFAMILY RING/U-box 21 107 - -
Vifa4g04667 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Vifa4g04667 1039 FunFam Cellulose synthase 19 110 - -
Vifa4g04667 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 234 1006 - -
Vifa4g04667 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vifa4g04667 1039 Coils Coil 429 449 - -
Vifa4g04667 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 476 622 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04667 Vifa-Chr4 1480011319 1480015670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04667 1 1039 Cell Wall Biosynthesis AT5G17420 85.288 0.0 1826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04667 K10999 - gmx:100779834 2003.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04667 4 1480011319 1480015670 Vifa4g04667 4 1480011319 1480015670 ECH