Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04659 ATGATGTGTTTTCTTAAACTTACAATGTTTCTGTTCTTTTTTCTTGTCGTTGTTCATACTCATTCTAGAGTTCTTGTGAAAGAACATATTGATATTGGCCTTGTGAATGATAAGAATTCATTAGTTTCATTCATGTCATGCATTATTTCGGACCCAGAAAACACGCTAACGAGTTGGAAATCAAATGTTGTTCATGTTTGTGATTGGTCTGGTGTAAAATGCAACAATGCAAGTAATAATAGAAGGATTATAGAACTTGATCTAAGTGGAAGATCATTAACAGGAACTATATCCCCTTCTCTTGCTAACCTCTCTTTGTTGCAAATTCTCGACCTTTCTCGAAATCATTTGACGGGTCACATTCCAAGAGAATTAGGCTATTTACTTCATCTTCAAGAACCTAGTTTGTCTTGGAATTTTCTTCAACGAAACATTCCTTTAGAGTTTGGTTCATTACACAACATGTATTACCTTGACTTGGGAAGCAATCAACTTGAGGGAGAGATTCCTCCATCACTTTTATGTAATGGAACTTCATTGAGTTATATAGACTTATCTAATAATTCATTAGTGGGGAAAATTCCATTAAACAATGATAAGTGTGTGCTTAAAGAGCTTAAGTTCTTATTACTTTGGTCTAACAAACTTGTAGGACAAGTTCCTTTGGCTCTTTCAAACTCTACCAAGCTTAAGTGGCTTGATTTGGAATCAAACATGTTAAGTGGTGAACTTCCATCTAAGATTATTTGTAATTTTCCACAATTGCAATATCTCTACTTATCATATAACAATTTTGTTAGCCATGATGGTAACACTAACCTTGAACCTTTCTTTGCTTCCTTGATGAACTCGTCGAACTTTCAAGAACTTGAATTGGCCGGAAACGGTCTCGGCGGGAAGCTTCCTCGTATTATAGGTAATCTTCCTTCCGGCATGCAACATCTTCACCTACAAGAGAATCTCATACATGGCGCTATACCACCTCAAATTTCCAGCCTTGTCAATTTAACTTTGTTGAAGTTGTCTAGTAACCGAATAAATGGAACAATCCCTCAAAGCCTATGCAAGATTGTTAGGCTAGAGAGAATTTACCTGTCGAACAATTATCTATCTGGTGAAATTCCTTCAACTCTCGGCGACATCAAGCATCTTGGACTACTTGATTTGTCGAAAAACAGGCTTTCTGGTTCGATACCGGATAGTTTTTCCAAACTCCCTCAGTTAAGAAGGCTTTTACTTTACGACAACAAGCTTTCCGGAACAATTCCTCCAAGTCTAGGAAAATGTGTGAACTTGGAGATTCTAGACTTGTCTCATAACATGATCACAGGAAAGATTCCTTCAGAAGTTGCAGCATTGAGTAGCTTGAAACTATACTTGAATTTGTCGAACAACGAGTTACAGGGTCCTTTACCATTAGAGTTAACCAAAATGGATATGGTTCTAGCTATCGATGTATCCATGAATAATCTCTCCGGAAGAATTCCACCACAGATCAAAAACTGCGTAGCATTAGAATATCTTAATCTTTCTGGTAATTCCTTAGAGGGTCCTCTCCCTTATTCTGTAGGACAATTGCCTTATATTCAATCACTTGATGTATCTTCAAACCAATTGAATGGACCAATACCAGAGTCCCTTCAGCTCTGCTCCTATCTCAAAACACTTAACTTCTCTTTCAACAAATTCTCAGGAAATGTTTCAAACAAAGGAGCATTTTCGTCTTTAACCGCAGAATCTTTCCTAGGAAACTATAATCTCTGTGGTCCATTTAAAGGCATGAAACAATGTCATAGGAAAAACAGTTACCATTTGGTGTTGTTGTTAGTTCCTATGTTACTATTTGGCACACCTATGATATGCATGTGTAGAAACTCCATGATAATCAAGTCAAAAGTGAGAAAAAAACAGCGAGCCGTTAGTGACGGATGTGACGCGGAGGATGAAGAAAAAGATGAAACAAAAGAGCTCGGGTATCCAAGAATTTCTTATAGACAACTTCGAGAAGCTACCGGAGGGTTCAGTGGTTCAAGCCTCATCGGTTCAGGCCGGTTTGGACGGGTTTACAAAGGTGTACTCTTAGATAATACAAGAGTAGCAGTTAAGGTATTAGATACAACAACAACAACAAAAGACGATGAGATATCATGGAGCTTTAGAAGGGAATGCCGAATTCTTAAAAAGATAAGGCACAGAAATTTAATAAGGATCATTATGATTTGCAGCAAGAAGGAACTTAAGGCAATTGTTCTTCCATTGATGCCAAATGGTAGTCTTGAGAGGAACTTATATGATCCAAACAATGAATTAAGCAAGAAGTTGAGTGTGATTCAAATGATTAAGATTTGCAGTGATGTAGCTGAGGGAATGTGTTATCTGCACCATTGCTCTCCTGTGAAAGTAGTTCATTGTGACCTTAAGCCTAGTAATATACTACTAGATGATGATTTCACGGCTTTGGTGTCGGATTTTGGAATTTCAAGGCTTCTAAAAGGCGACAATGGCGTTAACTCCGCTTGTAACTCGATATCTTTTAGTTCAACACATGGCTTGTTATGTGGCTCTGTTGGCTATATAGCTCCTGAATATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTATGGAGTAACTCTGTTAGAAATAGTGACCGGAAGACGCCCTACCGATGTCCTCATCCACGAAGGCTCTAGCTTGCATGATTGGGTTAAGAGACAATACACACAGCCACACAAACTTGAAAGCATTGTTGAACAAGCACTTCAAAGATTCTCTCTTTCTTGTGTGTCAAGTCACCGCAACAAAATTTGGGAAGATGTTATGTTGGAACTCATTGAGCTAGGGCTACTCTGCACGCAGCAGAACCCTTCAACAAGACCGACGATGCTAGATGTAGCACAAGAGATGGGGAGGTTGAAGGATCACATCAATAATTTTTCACGGGAGACGAAAATTTGA 2967 0.3839 MMCFLKLTMFLFFFLVVVHTHSRVLVKEHIDIGLVNDKNSLVSFMSCIISDPENTLTSWKSNVVHVCDWSGVKCNNASNNRRIIELDLSGRSLTGTISPSLANLSLLQILDLSRNHLTGHIPRELGYLLHLQEPSLSWNFLQRNIPLEFGSLHNMYYLDLGSNQLEGEIPPSLLCNGTSLSYIDLSNNSLVGKIPLNNDKCVLKELKFLLLWSNKLVGQVPLALSNSTKLKWLDLESNMLSGELPSKIICNFPQLQYLYLSYNNFVSHDGNTNLEPFFASLMNSSNFQELELAGNGLGGKLPRIIGNLPSGMQHLHLQENLIHGAIPPQISSLVNLTLLKLSSNRINGTIPQSLCKIVRLERIYLSNNYLSGEIPSTLGDIKHLGLLDLSKNRLSGSIPDSFSKLPQLRRLLLYDNKLSGTIPPSLGKCVNLEILDLSHNMITGKIPSEVAALSSLKLYLNLSNNELQGPLPLELTKMDMVLAIDVSMNNLSGRIPPQIKNCVALEYLNLSGNSLEGPLPYSVGQLPYIQSLDVSSNQLNGPIPESLQLCSYLKTLNFSFNKFSGNVSNKGAFSSLTAESFLGNYNLCGPFKGMKQCHRKNSYHLVLLLVPMLLFGTPMICMCRNSMIIKSKVRKKQRAVSDGCDAEDEEKDETKELGYPRISYRQLREATGGFSGSSLIGSGRFGRVYKGVLLDNTRVAVKVLDTTTTTKDDEISWSFRRECRILKKIRHRNLIRIIMICSKKELKAIVLPLMPNGSLERNLYDPNNELSKKLSVIQMIKICSDVAEGMCYLHHCSPVKVVHCDLKPSNILLDDDFTALVSDFGISRLLKGDNGVNSACNSISFSSTHGLLCGSVGYIAPEYGMGKHASTEGDVYSYGVTLLEIVTGRRPTDVLIHEGSSLHDWVKRQYTQPHKLESIVEQALQRFSLSCVSSHRNKIWEDVMLELIELGLLCTQQNPSTRPTMLDVAQEMGRLKDHINNFSRETKI 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04659 988 ProSiteProfiles Leucine-rich repeat profile. 431 453 IPR001611 GO:0005515
Vifa4g04659 988 Pfam Protein kinase domain 678 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04659 988 SUPERFAMILY RNI-like 77 371 - -
Vifa4g04659 988 SMART LRR_typ_2 381 404 IPR003591 -
Vifa4g04659 988 SMART LRR_typ_2 333 357 IPR003591 -
Vifa4g04659 988 SMART LRR_typ_2 405 429 IPR003591 -
Vifa4g04659 988 SMART LRR_typ_2 152 176 IPR003591 -
Vifa4g04659 988 SMART LRR_typ_2 252 275 IPR003591 -
Vifa4g04659 988 SMART LRR_typ_2 104 128 IPR003591 -
Vifa4g04659 988 Gene3D Phosphorylase Kinase; domain 1 644 752 - -
Vifa4g04659 988 Gene3D Ribonuclease Inhibitor 35 199 IPR032675 -
Vifa4g04659 988 Pfam Leucine rich repeat 205 265 IPR001611 GO:0005515
Vifa4g04659 988 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Vifa4g04659 988 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 208 603 - -
Vifa4g04659 988 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 754 985 - -
Vifa4g04659 988 Gene3D Transferase(Phosphotransferase) domain 1 754 987 - -
Vifa4g04659 988 ProSitePatterns Protein kinases ATP-binding region signature. 680 702 IPR017441 GO:0005524
Vifa4g04659 988 SUPERFAMILY L domain-like 280 579 - -
Vifa4g04659 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Vifa4g04659 988 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 360 972 - -
Vifa4g04659 988 SUPERFAMILY Protein kinase-like (PK-like) 656 970 IPR011009 -
Vifa4g04659 988 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Vifa4g04659 988 CDD STKc_IRAK 680 975 - -
Vifa4g04659 988 ProSiteProfiles Protein kinase domain profile. 674 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04659 988 Pfam Leucine Rich Repeat 505 523 IPR001611 GO:0005515
Vifa4g04659 988 Pfam Leucine Rich Repeat 431 449 IPR001611 GO:0005515
Vifa4g04659 988 SMART serkin_6 674 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04659 988 FunFam Leucine-rich repeat receptor-like protein kinase 34 197 - -
Vifa4g04659 988 Gene3D Ribonuclease Inhibitor 200 601 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04659 Vifa-Chr4 1477390771 1477393926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04659 21 977 Receptor kinase-like Gene Family AT3G47110 34.922 7.15e-156 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa4g04659 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04659 - - tpra:123909601 1385.16