Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04649 ATGGCGAAAAAATCGCAGAAGCAAATCGAGAAAGACAATGTTAACAATGATCTAAATGCAAGTAATACGGTGGTGACAAAGGCGAAACGGACGAGGAAGAGTGTCCCTAGAACTTCTCCACCTCAACGCAGCTCGATATATCGAGGAGTCACTAGGCACCGGTGGACCGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAGTCTCAGAACAAGAAAGGCAGACAAGTATATCTTGGTGCTTATGATAATGAGGAGACTGCAGCACATGCTTATGATTTAGCAGCATTGAAATATTGGGGTCAAGATACAATTATTAATTTTCCGTTATCAAATTATGAGAAAGAACTTACAGAAATGGAAACTCAATCAAGAGAGGAGTATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCTAGAGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTAGGATTGGAAAAGTTTTTGGCAATAAGTATCTATATCTAGGAACTTATGCTACACAAGAAGAAGCGGCTACAGCTTATGACATGGCAGCTATTGAGTATCGTGGAATTAACGCGGTTACAAATTTCGATCTCAGCCGATATATTAAGTGGCTTAAGCCCAACAACAACAATAGTGAAAACAATGACAAATCCAACATTAATCTTTGCAACATTAACTCTAACTATAGTACGAATGACACAACCTCTAATGAAGAATTGGAATTTACCTTAGACACTGAAATAGTATCACTCAATACTACTACTACTACTGATGAAACCACATTGGTTCAACCTCGACCAACGAGTGCCACATCAGCCCTAGAGCTTCTTCTTCAATCATCTAAGTTTAAGGAAATGGTGGAAATGGCGTCTATGACATCTAATGTTTCAACAACGTTGGAGTCTGATCAATTGTCACAATGTGCATTTCCTGATGATATTCAAACTTATTTTGAATATGAAGATTTCAGTGATACTATGATTGATGATCTCAACTCTATTGTGCCTATGTTTCATTGTGATGGTTTTGAGGGTGCTGAGATTTTATAG 1077 0.3825 MAKKSQKQIEKDNVNNDLNASNTVVTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYEKELTEMETQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGINAVTNFDLSRYIKWLKPNNNNSENNDKSNINLCNINSNYSTNDTTSNEELEFTLDTEIVSLNTTTTTDETTLVQPRPTSATSALELLLQSSKFKEMVEMASMTSNVSTTLESDQLSQCAFPDDIQTYFEYEDFSDTMIDDLNSIVPMFHCDGFEGAEIL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04649 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 267 - -
Vifa4g04649 358 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 FunFam AP2-like ethylene-responsive transcription factor 45 114 - -
Vifa4g04649 358 Gene3D AP2/ERF domain 46 114 IPR036955 GO:0003700|GO:0006355
Vifa4g04649 358 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Vifa4g04649 358 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Vifa4g04649 358 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Vifa4g04649 358 MobiDBLite consensus disorder prediction 12 29 - -
Vifa4g04649 358 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 CDD AP2 45 114 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 MobiDBLite consensus disorder prediction 1 45 - -
Vifa4g04649 358 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 Pfam AP2 domain 46 104 IPR001471 GO:0003700|GO:0006355
Vifa4g04649 358 SUPERFAMILY DNA-binding domain 45 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04649 Vifa-Chr4 1474818172 1474820049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04649 42 210 AP2-EREBP Transcription Factor Family AT5G57390 73.373 4.08e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa4g04649 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04649 K09285 - gmx:100793339 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04649 4 1474818172 1474820049 Vifa4g04649 4 1474818172 1474820049 ECH