LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g04646	ATGCCTCTCAACTTTCTCTTCCTCTTCCTCCTCCTCCTCCTCTCCCACCATCCTCTCTCTTCCGCTTCCGCACCTCGCAACCCCGAAGTGGAAGCTTTGATGAGTATAAAAGATTCCCTCAACGATCCTCACGGTGCGTTAAGCAACTGGGACGAATACTCAGTAGACCCTTGCAGTTGGTCTATGATTACCTGCTCTTCCGATTACTTCGTTATTGGCCTCGGAGCTCCCAGTCAATCACTCTCTGGAATTTTATCTTCTGCTATCGGAAATTTAACTAATCTTAAACAAGTGTTACTGCAGAATAACAATATCTCAGGCAAAATACCACCGGAACTTGGAAATCTTCCCATGCTTCAGACTTTAGATCTTTCGAGTAACAGTTTCTCTGGGTTCATTCCACCTTCACTTAGTCAATTGAATAGTCTCAAGTACCTAAGGCTGAACAACAATAGTTTGTCTGGACCCTTTCCTGTTTCGCTGGACAAAACTACACAACTTACTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCCAGGTCATTTAATATTGCGGGAAACCCATTAATTTGTCTAAGCAAATCTATTGAAGGCTGCTCCGGAACAGTGACTCTTATGCCTGTTCCTTTCTCACAAGTATCATCACAAGGAAAACACAAGTCCAAAAAACTGGCAATTGCTCTTGGGGTCAGCTTTGGTTGTGTTTCTCTCTTAATCGTGTGTTTAGGGCTGTTTTGGTATAGAAAGAAAAGACAGCATGGAGCCATCTTGTATATTGGTGATTATAAAGAGGAGGCTGTTGTTAGCTTAGGGAATCTTAAAAGTTTCGGTTTCAGAGAGCTCCAACATGCAACTGATAGTTTCAGCTCCAAGAGTATACTCGGTGCTGGAGGTTTTGGCAACGTTTACAGAGGGAAGCTTGGAGATGGCACAATGGTGGCGGTGAAAAGACTGAAAGATGTAAATGGTAGTGCTGGTGAATTACAGTTCCAAACAGAATTGGAAATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTATTGAAAAACTTCTGGTTTACCCTTACATGTCTAACGGAAGTGTAGCATCCAGGCTTAGAGGAAAACCAGCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCAAGGGGCCTTCTGTACCTTCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTTAAGGCTGCTAACGTACTTCTGGATGACGATTACGAGGCTATTGTTGGTGATTTTGGTCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGTACTGTCGGGCACATTGCGCCGGAGTACCTATCCACCGGCCAATCATCTGAGAAAACTGATGTGTTTGGATTCGGCATTCTCTTGTTAGAGCTTATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACCTTGAATCAAAAAGGTGCTATGCTTGAGTGGGTGAGGAAAATACAGCAAGAAAAAAAGGTTGAAGTGTTGGTGGACAAAGAACTAGGGAGCAACTATGATAGGATAGAGGTTGGGGAGATGCTGCAAGTAGCTCTACTTTGTACTCAATATTTGACAGCTCACCGTCCGAAAATGTCCGAAGTGGTCCGAATGCTCGAAGGAGACGGGCTTGCTGAGAAGTGGGCATCAACACATGATTATGGTAGCAACTGCTGGAGCCATAGTCAAAGCAACAACAGTAGCAGCAATAGCTCATGCCGCCCTACCTCTGCTTCAAAACATGATGACAATATTCATGATCGTTCGAGCTTGTTTGGCATGACAATGGATGATGATGACGATCAGTCCTTGGATTCCTATGCTATGGAACTCTCTGGTCCTAGATAA	1923	0.4384	MPLNFLFLFLLLLLSHHPLSSASAPRNPEVEALMSIKDSLNDPHGALSNWDEYSVDPCSWSMITCSSDYFVIGLGAPSQSLSGILSSAIGNLTNLKQVLLQNNNISGKIPPELGNLPMLQTLDLSSNSFSGFIPPSLSQLNSLKYLRLNNNSLSGPFPVSLDKTTQLTFLDLSYNNLSGPLPKFPARSFNIAGNPLICLSKSIEGCSGTVTLMPVPFSQVSSQGKHKSKKLAIALGVSFGCVSLLIVCLGLFWYRKKRQHGAILYIGDYKEEAVVSLGNLKSFGFRELQHATDSFSSKSILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGELQFQTELEMISLAVHRNLLRLIGYCATPIEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDDYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQQEKKVEVLVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASTHDYGSNCWSHSQSNNSSSNSSCRPTSASKHDDNIHDRSSLFGMTMDDDDDQSLDSYAMELSGPR	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g04646	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468
	Vifa4g04646	640	MobiDBLite	consensus disorder prediction	604	620	-	-
	Vifa4g04646	640	ProSitePatterns	Protein kinases ATP-binding region signature.	301	323	IPR017441	GO:0005524
	Vifa4g04646	640	MobiDBLite	consensus disorder prediction	584	603	-	-
	Vifa4g04646	640	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	26	208	-	-
	Vifa4g04646	640	SUPERFAMILY	L domain-like	26	199	-	-
	Vifa4g04646	640	FunFam	Somatic embryogenesis receptor kinase 1	266	371	-	-
	Vifa4g04646	640	ProSiteProfiles	Protein kinase domain profile.	295	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g04646	640	Pfam	Leucine rich repeat N-terminal domain	27	66	IPR013210	-
	Vifa4g04646	640	SUPERFAMILY	Protein kinase-like (PK-like)	277	565	IPR011009	-
	Vifa4g04646	640	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	4	574	-	-
	Vifa4g04646	640	Pfam	Protein tyrosine and serine/threonine kinase	298	564	IPR001245	GO:0004672\|GO:0006468
	Vifa4g04646	640	Gene3D	Phosphorylase Kinase; domain 1	266	371	-	-
	Vifa4g04646	640	Gene3D	Transferase(Phosphotransferase) domain 1	372	582	-	-
	Vifa4g04646	640	SMART	serkin_6	295	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g04646	640	Gene3D	Ribonuclease Inhibitor	26	208	IPR032675	-
	Vifa4g04646	640	Pfam	Leucine rich repeat	119	177	IPR001611	GO:0005515
	Vifa4g04646	640	FunFam	Somatic embryogenesis receptor-like kinase 1	372	583	-	-
	Vifa4g04646	640	MobiDBLite	consensus disorder prediction	584	640	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g04646	Vifa-Chr4	1471615285	1471618813	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g04646	5	640	Receptor kinase-like Gene Family	AT5G16000	63.932	0.0	791

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vifa4g04646		Pkinase	1.1e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g04646	-		-	gmx:100775565	1048.5