Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04605 ATGGGAAGAAGAACTTTTCTTCCATATAAAGATGAAACCTTTATGCCTCCATTACCGCAACCACCATATTCTTTTCATTTTCATCCAAACCCATCACCATTTCCACCCATCACTGTTTCATCTCTTCGATCTGATAATCTCAGTCCAAATGATAAATCCTTGAAGGTTAGTCCAAGCATTCTTCTAATAATCATCATTCTAGCCATTGTTTTCTTCGTTTCTGGTTTACTTCATCTCCTGGTTCGGTTCCTTTGGAGGCCTCGGGATAGAGACAGTGATGAACTGGACGATGTTACTGCTCTTCAAGGACAGTTGCAGCAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAGTCTTTCATTGATACTACTCTTCCTGTGTTTCTTTATAAGGCTATTATTGGATTGAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCTCGAAGATAAGCTTAGGTTGTTGCCGAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACTTGGCTTTTGTCTCATTCTACTTGTCCTCTTTGTAGAGGTAACTTGCTTCATGATTTCAACACAAACAATAATAACTGTTCCCCTATTGTTCTTGTTCTAGAATCTGGTAGTGATAGTTCAAGAGAAATTGTTCCAGAAAGAGATAATCCTACTGCTACTGCTATAGGTACAGGTAGTAGTGTTCTTGGCAGGACTAGTTCTGTTATGACAACAAATTCGGATTCGGCTTCGGTTGAAAACATTCCTAATCCGAAAGTTGTGACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGTGGTGGAGGAGGGGAAGGAAGTAGTAGCAACAATGTGGATGATAGGAGGTGTTTTTCGATGGGTTCATTTGCTTATATTATGGACGAAACATCTTCGTTGCAGGTACCGATAAGAACTCCGATGAAGATGAAATCGAGTAAGAAGAAAGCTGTTTTGCCTTTGATTCCAGGACATAGGCCAGCAATGTCGGAATGTGATTGCGAATCGAGAAGAGATTTCAAGTTTACAAGCTTTGATTCAACTAGAGGAGGAGTAGTTGAGGATTTTGCAGGTATTGGAAAGAGTAGAAAAGAGAGTTTTTCGATATCCAAGATTTGGCTTAGAGGGAAGAAAGATAAGACTAATGGTGATGCTGCAGATTCATCTAGAAGAGCTGTTTCATTTAGGTTTCCATTACAAAGTAATGATGCTTTGAAGGATAAGAATCTGAGGTTTCATGCAAGAAGTACTGTTTCTGAGATGGATTTTGGAGGAAGTGAATTTGGTGGTTATGATGAAGAGAATCAAAGTTGCTATAGTATGGATTCATCTCAAGCTAGAGCACCTTCATTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAAACAGAATAAGGTTGTTCATTCTTCAACTGCTTCTGCTTCTACTTCTACACTTTAG 1455 0.3918 MGRRTFLPYKDETFMPPLPQPPYSFHFHPNPSPFPPITVSSLRSDNLSPNDKSLKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPRDRDSDELDDVTALQGQLQQLFHLHDAGVDQSFIDTTLPVFLYKAIIGLKNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRGNLLHDFNTNNNNCSPIVLVLESGSDSSREIVPERDNPTATAIGTGSSVLGRTSSVMTTNSDSASVENIPNPKVVTVKLGKYRNVDGGGGGGEGSSSNNVDDRRCFSMGSFAYIMDETSSLQVPIRTPMKMKSSKKKAVLPLIPGHRPAMSECDCESRRDFKFTSFDSTRGGVVEDFAGIGKSRKESFSISKIWLRGKKDKTNGDAADSSRRAVSFRFPLQSNDALKDKNLRFHARSTVSEMDFGGSEFGGYDEENQSCYSMDSSQARAPSFARRTLLWLTGKQNKVVHSSTASASTSTL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04605 484 Pfam Ring finger domain 141 184 IPR001841 -
Vifa4g04605 484 SMART ring_2 142 183 IPR001841 -
Vifa4g04605 484 FunFam RING-H2 finger protein ATL46 103 189 - -
Vifa4g04605 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 192 IPR013083 -
Vifa4g04605 484 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vifa4g04605 484 CDD RING-H2_EL5-like 141 184 - -
Vifa4g04605 484 SUPERFAMILY RING/U-box 129 197 - -
Vifa4g04605 484 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04605 Vifa-Chr4 1459405325 1459406779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04605 46 479 C3H Transcription Factor Family AT2G18650 46.460 1.05e-102 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04605 - - gmx:100812651 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04605 4 1459405325 1459406779 Vifa4g04605 4 1459405325 1459406779 ECH