Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04600 ATGCTTTCAAGATCTTGTATAGGTTTATTAAATCACGTAACAACGAACGATTACATAGAAGAATCCACCACTCTTCAAAAAACGGTAACGCCGGTGACCGGAGAAGAAGATGAACTGAGCTTTCAACAAGATACCGTTTCGGTTTCGGTTTCATCATCGCCGGTTTCTCGGGAACGTAGAAGAATGATAATAGTAGCGAATCAGTTACCGATACGCGTTGTGAAAGCTTCTGAGGATGGTGAACAGAAGTTGAAATTTGAATGGGATGTTGATAGTATATCGTTTCAGCTGAAGGATGGTTTCTCTGAGAAAGTTGAGGTTTTGTACGTTGGGTCTTTGAAAGCGGAGGTTGATCAATCGGAACAAGATGAGGTTGCTCAGGTTTTGTTTGAGAAGTTTCGTTGTGTTCCCACTTTTTTACCTTCGGAGATTCATAATAAATTCTACCATGGTTTTTGTAAGCATTATCTATGGCCGTTGTTTCATTACATGCTTCCTGTGTCGAAGAGTCAAGGTGCGCGTTTTGATCGGTCTCAGTGGCTTGCTTATGTGTCTGCGAATAGAGTTTTTGCTGATAAGGTTACTGAGGTGATTAACCCTGATGAGGATTATGTTTGGGTTCATGATTATCATCTTATGATTTTGCCGACTTTCTTGAGGAAGAGGTGTCCTAGAGTGAAATTGGGGTTTTTTCTGCATAATACGTTTCCTACTTCGGAGATTTATAGAACATTGCCTGTTCGCGAGGAGATTCTGAGGGGTTTTTTGAACTGTGATTTGATTGGGTTTCATACTTTTGATTATGCTAGACATTTTTTGTCTTGTTGTAGTAGGATGTTGGGGTTGGATTATGAGTCTAAAAGGGGTTACATTGGACTTGATTACTTTGGGAGGAATGTTACTATTAAGATTTTACCTGCTGGGATTCATATGGGTCTTCTTGAGTCGGTGTTGGCGTTGCCAGATACTGCTACGAGGGTTAAGGAGTTGAAGAAGGAGTTTGATGGGAAGGTTGTGGTTTTGGGGGTTGATGATATGGATTTGTTTAAAGGTATTGGGTTGAAGTTTTTGGCATTGGGGAAGCTTTTGGAGGTGAATGAAAAAGCAAGGGGGAGAGTTGTTTTGGTTCAGATTCTGAATCAAGCGAGGAGTAGTGGAAAAGATATTCAGGACTTGAAGTTTGAGATTGAAGCCATTGCTAAGGAGATTAATGATAAATATGGTGATAAACAATCTGGGTATAGGCCAATTGTTTGCATAAATGGGCCTGTTTCAACTCAGGAGAAGGCTGCATACTATGCTATATCGGAATGTTGTATTGTAAATGCTGTGAGGGATGGGATGAATTTGATGCCTTATGAGTATACTGTTTGCAGACAAGGAAGTGTTGAATTGGACAAAGCACTGGGGGTGGAAAATGATGAGGCTAAAAAGAGTGTTATCATTGTTTCTGAGTTCATTGGTTGTTCTCCTTCGCTCAGCTGTGCGATTCGGGTGAATCCGTGGAACATTGATGATGTTTGTGAAGCAATGAACTCAGCAATCAGAATGGCGGATGCTGAGAAGCAATTGAGACACGAGAAGAATTATAAGTATATAAACTCTCATGATGTAGCTTATTGGGCTAAGAGTTTTGATCAAGATTTGGAGAGGGCTTGTAGGGAGCATTATGTGAAGAAGTGGTTGGATGTTGGTTTGGGACTCAATTTTAGAATCATTGCTTTGGATCCTAGTTTTAAGAAGCTTTCTGTTGATTACATTGTCTCTGCTTATAGAGATACAAAGAGTAGATTGATCCTTTTGGATTATGATGGTACCATGATGCCTCAGGGATCACTAGACAAAACCCCTAGCTTGGATGTTATCTCTCTCTTGAATGGCTTATGCAGTGATCCCAAAAATGTAGTTTTCATTGTTAGTGGCAGGGATAGAGAATGCCTTAGCAAGTGGTTTTCTCCCTGTGACAAACTTGGTCTCTCTGCAGAACATGGTTACTTCACTAGGTGGAGCAAGGATGCTCCTTGGAAAACATGTGGATTGGCATCAGATTTTGATTGGAAAAATACTGTAGAACCGGTGATGGCGCTTTACACTGAAGCAACTGATGGTTCCTTCATTGAAAAAAAGGAAAGCGCAATGGTTTGGCAACATCAAGAAGCAGATCCTGATTTCGGATCGTGGCAGGCTAAAGAGCTTCTTGATCACCTCGAGAGCGTGTTAGCTAATGAACCTGTAGTAGTTAAAAGGGGACAACATATTGTTGAAGTAAAGCCTCAGGGTGTGAACAAAGGTATAGTGGTGGAAGAGCTTATATCAACCATGAGGAATGAAGAGAAGTCACCGGATTTTCTCCTATGCATAGGAGATGATAGATCAGATGAAGATATGTTTGAAAGCATTGCGAATTTAGCTTTACCAACCAAATCACAAGTATTTCCATGCACTGTCGGTCAGAAGCCAAGTAGGGCCAAATACTATCTTGACGATACTCCGGATGTAATCACGCTTCTCGAAGGACTTCTGCGGCATCAGCAGCAGATTAAGCACAATGTAGAATGA 2559 0.4095 MLSRSCIGLLNHVTTNDYIEESTTLQKTVTPVTGEEDELSFQQDTVSVSVSSSPVSRERRRMIIVANQLPIRVVKASEDGEQKLKFEWDVDSISFQLKDGFSEKVEVLYVGSLKAEVDQSEQDEVAQVLFEKFRCVPTFLPSEIHNKFYHGFCKHYLWPLFHYMLPVSKSQGARFDRSQWLAYVSANRVFADKVTEVINPDEDYVWVHDYHLMILPTFLRKRCPRVKLGFFLHNTFPTSEIYRTLPVREEILRGFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYFGRNVTIKILPAGIHMGLLESVLALPDTATRVKELKKEFDGKVVVLGVDDMDLFKGIGLKFLALGKLLEVNEKARGRVVLVQILNQARSSGKDIQDLKFEIEAIAKEINDKYGDKQSGYRPIVCINGPVSTQEKAAYYAISECCIVNAVRDGMNLMPYEYTVCRQGSVELDKALGVENDEAKKSVIIVSEFIGCSPSLSCAIRVNPWNIDDVCEAMNSAIRMADAEKQLRHEKNYKYINSHDVAYWAKSFDQDLERACREHYVKKWLDVGLGLNFRIIALDPSFKKLSVDYIVSAYRDTKSRLILLDYDGTMMPQGSLDKTPSLDVISLLNGLCSDPKNVVFIVSGRDRECLSKWFSPCDKLGLSAEHGYFTRWSKDAPWKTCGLASDFDWKNTVEPVMALYTEATDGSFIEKKESAMVWQHQEADPDFGSWQAKELLDHLESVLANEPVVVKRGQHIVEVKPQGVNKGIVVEELISTMRNEEKSPDFLLCIGDDRSDEDMFESIANLALPTKSQVFPCTVGQKPSRAKYYLDDTPDVITLLEGLLRHQQQIKHNVE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04600 852 CDD HAD_TPP 598 833 - -
Vifa4g04600 852 FunFam Trehalose-6-phosphate synthase 2 680 759 - -
Vifa4g04600 852 Gene3D Glycogen Phosphorylase B; 50 316 - -
Vifa4g04600 852 Gene3D Glycogen Phosphorylase B; 317 535 - -
Vifa4g04600 852 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824|GO:0005992
Vifa4g04600 852 Pfam Trehalose-phosphatase 600 830 IPR003337 GO:0003824|GO:0005992
Vifa4g04600 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 554 - -
Vifa4g04600 852 FunFam Alpha,alpha-trehalose-phosphate synthase 317 534 - -
Vifa4g04600 852 SUPERFAMILY HAD-like 597 844 IPR036412 -
Vifa4g04600 852 NCBIfam trehalose-phosphatase 595 841 IPR003337 GO:0003824|GO:0005992
Vifa4g04600 852 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 726 852 - -
Vifa4g04600 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
Vifa4g04600 852 Gene3D - 596 714 IPR023214 -
Vifa4g04600 852 Gene3D - 726 851 IPR023214 -
Vifa4g04600 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 713 - -
Vifa4g04600 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 49 840 IPR001830 GO:0003824|GO:0005992
Vifa4g04600 852 CDD GT20_TPS 61 550 IPR001830 GO:0003824|GO:0005992
Vifa4g04600 852 NCBIfam HAD-IIB family hydrolase 598 799 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04600 Vifa-Chr4 1457536508 1457539395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04600 55 850 Trehalose Biosynthesis Gene Families AT2G18700 67.122 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04600 K16055 - gmx:100810498 1316.98