Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04585 ATGGGATCTTCTCTCAGTTGCTGTGGTTCTGAGAAGGTTGATGAAGGGCCAACATCTTTTGGTGTAGCTAACAATTCATGGAGAATTTTCACATACAAGGAGTTACATACGGCTACGAACGGGTTCAGCGATAATTATAAGCTCGGTGAAGGTGGATTCGGAAGTGTCTATTGGGGAAGAACCAATGACGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCAATGAACTCAAAGGCGGAGATGGAATTTGCTGTAGAAGTTGAAGTACTTGGAAGGGTCAGGCACAAAAATTTGTTGGGTCTTAGAGGCTATTGCGTTGGCGATGATCAACGTCTTATTGTCTATGATTACATGCCGAATCTCAGTCTTCTTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTCCAACTCAACTGGCAAAAGAGAATGAGCATTGCAATTGGCTCCGCGGAAGGCATTTTGTACTTGCATCATGAGGTCACGCCACACATTATCCATAGGGACATCAAAGCAAGTAATGTCTTACTCGATTCAGATTTCGTGCCTCTGGTTGCTGATTTTGGTTTCGCCAAGCTAATACCAGAAGGGGTTAGCCACATGACAACGCGCGTTAAGGGTACGTTAGGATACTTAGCGCCCGAGTATGCAATGTGGGGAAAAGTTTCTGAGAGTTGTGATGTTTATAGTTTTGGAATTCTTCTGCTTGAGCTAGTAACTGGTAGAAAGCCCATAGAGAAGTTACCTGGTGGGCTTAAGAGGACAATAACTGAATGGGCTGAGCCGTTGATAACGAAAGGAAGGTTTAGGGATATGGTTGATCCAAAACTTAGAGGAAACTTTGATGAAAATCAAGTTAAACAAACAGTTAATGTGGCTGCTCTTTGTGTGCAAAGTGCGCCTGAGAAACGACCGAATATGAAGCAAGTTGTTAGTCTTTTGAAAGGACAAGAGCCTGATCAAGGGAAAGTGGTGAGTAAGATGAGAATAGATAGTGTTAAGTATAATGCGGAATTGTTGGCACTTGATCAACCTAGTGACGATGATGATGATTATGATGGAAATAGTAGCTATGGTGTTTTTAGTGCCATTGATGCTCAGAAGATGAATGATCCTTACAAGCGCGGCGATAACAGGAAATTTGGATGA 1146 0.4276 MGSSLSCCGSEKVDEGPTSFGVANNSWRIFTYKELHTATNGFSDNYKLGEGGFGSVYWGRTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQKRMSIAIGSAEGILYLHHEVTPHIIHRDIKASNVLLDSDFVPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITKGRFRDMVDPKLRGNFDENQVKQTVNVAALCVQSAPEKRPNMKQVVSLLKGQEPDQGKVVSKMRIDSVKYNAELLALDQPSDDDDDYDGNSSYGVFSAIDAQKMNDPYKRGDNRKFG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04585 381 PANTHER OS01G0253100 PROTEIN 25 319 - -
Vifa4g04585 381 Gene3D Transferase(Phosphotransferase) domain 1 118 335 - -
Vifa4g04585 381 Pfam Protein tyrosine and serine/threonine kinase 46 313 IPR001245 GO:0004672|GO:0006468
Vifa4g04585 381 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04585 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vifa4g04585 381 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 332 - -
Vifa4g04585 381 CDD STKc_IRAK 48 315 - -
Vifa4g04585 381 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Vifa4g04585 381 ProSiteProfiles Protein kinase domain profile. 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04585 381 Gene3D Phosphorylase Kinase; domain 1 16 117 - -
Vifa4g04585 381 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vifa4g04585 381 SUPERFAMILY Protein kinase-like (PK-like) 22 313 IPR011009 -
Vifa4g04585 381 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04585 Vifa-Chr4 1451092826 1451094280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04585 9 367 Trihelix Transcription Factor Family AT1G70460 43.351 1.11e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vifa4g04585 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04585 - - gmx:100783365 659.448