Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04584 ATGGAACTTCCTTCACCTTCTACAATACTCATTGGTCTTTCCTTAGATTCAAATGATAGCAAGGAGCTTCTATCATGGACAATCAAAGTTCTAGCCAAACCACATGATACTATTGTTGCAGTGCATGTTCTTGTTGGTGAGAATATGAAGAAAAGTCTGTCTGTGAGAAGAAGACAATCACATCTTAGACAAGCAAAAGCATATGTTATATCTGTGCTCGGAGAATTCGCACAGACCAGTTGGTCTAAACAGATTAATTTGGAGGCAAAAGTGGCACTGAGTTCTACAATAGGTCGCGGTTTAGTGAAGGAAGCCGAGTTAATTTCGGCCGATTTTCTTCTGCTTCGCGGAACAAGAAACCGATCAAATAAAATCGGAACCTTGAAAGGAATTAGCAAGTATTGCTTTGATCATATGCATGGAAGTTGCACAATGGTCTCGGTTGGTACAGAAATGAATGCACAAAACAGGTCACCAAGAACAGTACTAGATGGATTAGAGGGACAATCCAATAGCACAGAAGATGATACTTTTAGCACTCGAGCATCGAGCATGACATATACGCCTTCATCTGATTCGAATTCGAATACTAAGAGAAAATCGAAGTTGAGAAAATCGCAATTCTCATTCAGGTTTATGATATCATTCCTTGGTTCACCATTCCGAATAAAGAGCAGTAACAACATGTCGAAAAATGAAATACATCATCAACCCTTGTTGAAGTGCTTCAGCTATGAAAATATTTGCAATGCTACTAATCACTTTCACCAAGATAAGTTGGTTGGAAGAGGAGGGTACTCAGAAGTATATAAAGGTGATCTTAGTGATGGAGAAACCATTGCTGTGAAGAGGTTAGCCAAAGACAACAAAGATCCAAACAAGGAGAAAGAGTTTCTTATGGAGTTGGGTGTTATAGGACATGTCTGTCATCCGAATACCGCGAGTTTGTTAGGCTATTGCTTTGAAAATGGACTCTATCTGATTTTCAATTATTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGTAAAGCGGGAAGTTCACTTGACTGGCCTATAAGGTACAAAATTGCTATTGGAGTTGCAAGAGGTCTCCATTATCTTCATAAATGTTGCAAACATCGAATAATTCATCGTGACATTAAAGCCTCCAATGTTCTTCTTGGTCCGGATTATGAACCACAGATTACAGATTTTGGACTTGCAAAGTGGCTTCCTAACAAATGGACTCACCATGCTGTAATCCCAGTGGAGGGAACATTTGGATATTTAGCACCAGAGGTTTTTATGCACGGCATTGTGGATGAGAAAACTGATATTTTCGCATTTGGTGTTCTTCTTTTGGAGATCGTAACCGGAAGAAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCAAAGCCTCTAATGGAATCAGGAGATACCGCTGAGCTGGCTGATCCAAGAATGGAAGGTAAATATGATACAGAAGAATTGCATAGGGTAATCCTAACAGCTTCATACTGTGTCAGACAAACTTCCACTTGGCGTCCTGCCACGACCGAGGTGTTGGAGATGTTAACTAGTGGCCAAGACTATAAAATCGGAAAAAGTGAGAGAATTCCAAAGTTCACTTCTGATGAATTGGATGATTACTCCATGGTTTTTGGATATGATGTACCTTCGGAAATATCTCTAGAGGATTATTTGTGA 1698 0.3969 MELPSPSTILIGLSLDSNDSKELLSWTIKVLAKPHDTIVAVHVLVGENMKKSLSVRRRQSHLRQAKAYVISVLGEFAQTSWSKQINLEAKVALSSTIGRGLVKEAELISADFLLLRGTRNRSNKIGTLKGISKYCFDHMHGSCTMVSVGTEMNAQNRSPRTVLDGLEGQSNSTEDDTFSTRASSMTYTPSSDSNSNTKRKSKLRKSQFSFRFMISFLGSPFRIKSSNNMSKNEIHHQPLLKCFSYENICNATNHFHQDKLVGRGGYSEVYKGDLSDGETIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTASLLGYCFENGLYLIFNYSQNGNLSTALHGKAGSSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIFAFGVLLLEIVTGRRPVDSSKQNILLWAKPLMESGDTAELADPRMEGKYDTEELHRVILTASYCVRQTSTWRPATTEVLEMLTSGQDYKIGKSERIPKFTSDELDDYSMVFGYDVPSEISLEDYL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04584 565 FunFam Putative receptor-like serine/threonine-protein kinase 222 331 - -
Vifa4g04584 565 ProSiteProfiles Protein kinase domain profile. 255 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04584 565 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Vifa4g04584 565 SMART serkin_6 255 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04584 565 Gene3D Phosphorylase Kinase; domain 1 219 331 - -
Vifa4g04584 565 Gene3D HUPs 7 146 IPR014729 -
Vifa4g04584 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Vifa4g04584 565 MobiDBLite consensus disorder prediction 161 196 - -
Vifa4g04584 565 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 332 536 - -
Vifa4g04584 565 Pfam Protein kinase domain 255 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04584 565 Gene3D Transferase(Phosphotransferase) domain 1 333 539 - -
Vifa4g04584 565 PANTHER OS08G0249100 PROTEIN 60 534 IPR046958 -
Vifa4g04584 565 SUPERFAMILY Protein kinase-like (PK-like) 236 522 IPR011009 -
Vifa4g04584 565 MobiDBLite consensus disorder prediction 161 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04584 Vifa-Chr4 1450998368 1451001035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04584 243 561 Trihelix Transcription Factor Family AT1G70460 39.763 1.51e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa4g04584 Pkinase 4.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04584 - - gmx:100782832 920.998