Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04582 ATGAGTATTGAAAGAGTAGGAGGAGGAGGGCTTAAGAGTTTTCGAAGCGGATGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTTGTTCCGCCGCGCTTTTTTGCCATTCTGATTCCGCGTTTCTATGCATCGATTGTGATTCCAGGATTCATTCTGGTAACAAACTCTCCACGCGCCATGAGCGCGTCTGGATGTGCGAAGTTTGCGAACAAGCACCAGCCTCCGTCACGTGTAAAGCTGACGCCGCTGCTCTCTGCGTCACGTGCGACTCTGACATCCACTCTGCAAATCCACTCGCCCGCCGCCACGAGCGTGTCCCCGTCGAACCATTCTTCGACTCCGCCGAATCCGTCGTGAAATCCTCCGCCGCCGCCGCCGCCACTGTCGCTTCATTCAATTTCGCTGTTCCTTCCGACGACGGATTCAGCCACGACGAAGTTGAAGCATCTGCCTGGCTGATTCCGAATCTGAATCCGAATTTCGGATCCAAACTTTCCGAAACTCCAGATATCAAAACCAGAGAGATTTTCTTCTCCGATATGGATCCGTTTTTCGATTTCGATTACTCGAACAACTTCCAGAACAATAATTGCAACGCGATAAACGACAGCGTAGTTCCAGTTCAAACCAAAGCTACTCCGGCGGCAACGATGATGAATCATCATAACTCAGAAGCTTGCTTCGATATCGATTTTTGCAGATCGAAGCTATCCTCACTTAACTATCCATCACATTCTATTAGCCAAAGCGTTTCGTCTTCTTCGCTTGACGTCGGAGTGGTGCCGGATGGAAACGTGGTATCGGAGTTTTCATACACTTTTGGTTCTGAATCAATGGTATCAGGTGGTGTGAATAGCAATAGCAACAACCAAGGGGTGCAAGGAGCAACTCAATTATGTGGAATAGATCGTGAAGCGAGGGTTCTGAGATACAGAGAGAAGAGGAAGAATCGTAAATTTGAAAAAACAATTCGTTACGCTTCGCGAAAAGCTTATGCAGAAACCCGGCCTAGAATCAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTAGACCGGCTCTATAACCCGGCAGATCCTCTCACCATCCCTGGTTCACTTTTAATGGACTCCCCTTACGGTGTCGTTCCGACGTTTTAG 1152 0.487 MSIERVGGGGLKSFRSGWSVPPKLCDSCKLCSAALFCHSDSAFLCIDCDSRIHSGNKLSTRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSAAAAATVASFNFAVPSDDGFSHDEVEASAWLIPNLNPNFGSKLSETPDIKTREIFFSDMDPFFDFDYSNNFQNNNCNAINDSVVPVQTKATPAATMMNHHNSEACFDIDFCRSKLSSLNYPSHSISQSVSSSSLDVGVVPDGNVVSEFSYTFGSESMVSGGVNSNSNNQGVQGATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLTIPGSLLMDSPYGVVPTF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04582 383 Pfam B-box zinc finger 65 110 IPR000315 GO:0008270
Vifa4g04582 383 Pfam CCT motif 306 348 IPR010402 GO:0005515
Vifa4g04582 383 ProSiteProfiles Zinc finger B-box type profile. 63 110 IPR000315 GO:0008270
Vifa4g04582 383 ProSiteProfiles Zinc finger B-box type profile. 20 67 IPR000315 GO:0008270
Vifa4g04582 383 SMART bboxneu5 20 67 IPR000315 GO:0008270
Vifa4g04582 383 SMART bboxneu5 68 110 IPR000315 GO:0008270
Vifa4g04582 383 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Vifa4g04582 383 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 361 IPR045281 GO:0009909
Vifa4g04582 383 CDD Bbox1_BBX-like 68 110 - -
Vifa4g04582 383 CDD Bbox1_BBX-like 24 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04582 Vifa-Chr4 1449806751 1449807986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04582 8 383 C2C2-CO-like Transcription Factor Family AT5G57660 52.296 4.69e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa4g04582 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04582 - - cam:101510742 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04582 4 1449806751 1449807986 Vifa4g04582 4 1449806751 1449807986 ECH